2024-04-19 14:07:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001107112 1177 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus claudin 17 (Cldn17), mRNA. ACCESSION NM_001107112 XM_001070924 XM_221711 VERSION NM_001107112.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1177) AUTHORS Harris HJ, Davis C, Mullins JG, Hu K, Goodall M, Farquhar MJ, Mee CJ, McCaffrey K, Young S, Drummer H, Balfe P and McKeating JA. TITLE Claudin association with CD81 defines hepatitis C virus entry JOURNAL J Biol Chem 285 (27), 21092-21102 (2010) PUBMED 20375010 REFERENCE 2 (bases 1 to 1177) AUTHORS Krause G, Winkler L, Mueller SL, Haseloff RF, Piontek J and Blasig IE. TITLE Structure and function of claudins JOURNAL Biochim Biophys Acta 1778 (3), 631-645 (2008) PUBMED 18036336 REMARK Review article REFERENCE 3 (bases 1 to 1177) AUTHORS Hu YH, Warnatz HJ, Vanhecke D, Wagner F, Fiebitz A, Thamm S, Kahlem P, Lehrach H, Yaspo ML and Janitz M. TITLE Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins JOURNAL BMC Genomics 7, 155 (2006) PUBMED 16780588 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473989.1. On or before Oct 4, 2007 this sequence version replaced XM_221711.4, XM_001070924.1. ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1177 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="11" /map="11q11" gene 1..1177 /gene="Cldn17" /note="claudin 17" /db_xref="GeneID:304125" /db_xref="RGD:1307462" exon 1..1177 /gene="Cldn17" /inference="alignment:Splign:2.1.0" misc_feature 128..130 /gene="Cldn17" /note="upstream in-frame stop codon" CDS 140..814 /gene="Cldn17" /codon_start=1 /product="claudin-17" /protein_id="NP_001100582.1" /db_xref="GeneID:304125" /db_xref="RGD:1307462" /translation="
MAFYPVQIAGLVLGFFGLVGTVGTTLLPQWRVSAFIGSNIIIFERIWEGLWMNCIQQAMVTLQCKFYNSILALPPVLEAARALMCVAMALSLVALIIGICGMKQIECTSSSERVKAYLLGTSGVLFIVTGIFVLIPVSWTANIIIRDFYDPTIHAGQKRELGGALFLGWATAAVLFIAGGLLCGYCCCNRKEQWHGYPVSAYRVPPKDSQRKVTVPRKTSTSYV"
misc_feature 155..685 /gene="Cldn17" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
tgctgatttgggcaaacacatcatgggcagcaggagtgaagaagaccaggaaatcctctagtctagaagactcctacgcattgtgcatcttgaccatcttccttccttccaggctggaccagtaggctaaggaaagacaatggctttttatcccgttcagattgctggactagttcttggcttctttggcttggttgggacagtggggacaacacttctgcctcaatggagagtttcagctttcatcggcagcaatattattatctttgagagaatctgggaagggctttggatgaattgtatccagcaagctatggtcacgttgcagtgcaaattctataactccatattggctctccctccggtactggaagcagcgcgtgcactcatgtgtgtggccatggctctttccttggtcgctctcattatcggcatctgcggcatgaaacagattgagtgcaccagctccagtgagagggtcaaagcctacttgctgggaacgtcaggagtactctttattgtgactggtatcttcgttctgattccagtgtcctggaccgccaatatcatcatccgagatttctacgacccaaccatccacgcagggcagaagcgggaacttggaggagctctcttccttggctgggcaaccgctgctgtcctcttcattgcaggcgggctgctctgtggatactgctgctgcaacaggaaggaacagtggcatggatacccagtctctgcctaccgcgtgccaccaaaagacagccagaggaaggtcactgtgcctagaaaaacttccaccagttatgtctaaggcttgctttcaacaccagctcgtggcttatgctcagtgttttataaagtcgccccagaaactgtgagtacataaggcaggagaactacttttaagcagatttgaattgagatgaaagttatgatgtttttccctgaggaggaatataaatgacttatttggacattgggattccctgtgtgttattcggactcacgcttgttgaactcaatatttagtctaatttatagagtaaagcatcaagtatattctcagttatggtcatataattatgattactaatttttgcttgtcatgtattctaataagaaagtaaaatgttagattatagttgatatcaataaaacatacccattttcaaac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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