2024-05-08 14:05:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001106058 1331 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus claudin 10 (Cldn10), mRNA. ACCESSION NM_001106058 XM_001074876 XM_214250 VERSION NM_001106058.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1331) AUTHORS Hadj-Rabia S, Brideau G, Al-Sarraj Y, Maroun RC, Figueres ML, Leclerc-Mercier S, Olinger E, Baron S, Chaussain C, Nochy D, Taha RZ, Knebelmann B, Joshi V, Curmi PA, Kambouris M, Vargas-Poussou R, Bodemer C, Devuyst O, Houillier P and El-Shanti H. TITLE Multiplex epithelium dysfunction due to CLDN10 mutation: the HELIX syndrome JOURNAL Genet Med 20 (2), 190-201 (2018) PUBMED 28771254 REFERENCE 2 (bases 1 to 1331) AUTHORS Klar J, Piontek J, Milatz S, Tariq M, Jameel M, Breiderhoff T, Schuster J, Fatima A, Asif M, Sher M, Mabert K, Fromm A, Baig SM, Gunzel D and Dahl N. TITLE Altered paracellular cation permeability due to a rare CLDN10B variant causes anhidrosis and kidney damage JOURNAL PLoS Genet 13 (7), e1006897 (2017) PUBMED 28686597 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1331) AUTHORS Zemke AC, Snyder JC, Brockway BL, Drake JA, Reynolds SD, Kaminski N and Stripp BR. TITLE Molecular staging of epithelial maturation using secretory cell-specific genes as markers JOURNAL Am J Respir Cell Mol Biol 40 (3), 340-348 (2009) PUBMED 18757308 REFERENCE 4 (bases 1 to 1331) AUTHORS Krause G, Winkler L, Mueller SL, Haseloff RF, Piontek J and Blasig IE. TITLE Structure and function of claudins JOURNAL Biochim Biophys Acta 1778 (3), 631-645 (2008) PUBMED 18036336 REMARK Review article REFERENCE 5 (bases 1 to 1331) AUTHORS Ohta H, Adachi H and Inaba M. TITLE Developmental changes in the expression of tight junction protein claudins in murine metanephroi and embryonic kidneys JOURNAL J Vet Med Sci 68 (2), 149-155 (2006) PUBMED 16520537 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473951.1. On or before Oct 4, 2007 this sequence version replaced XM_214250.4, XM_001074876.1. ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1331 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="15" /map="15q24" gene 1..1331 /gene="Cldn10" /note="claudin 10" /db_xref="GeneID:290485" /db_xref="RGD:1308027" exon 1..406 /gene="Cldn10" /inference="alignment:Splign:2.1.0" misc_feature 226..228 /gene="Cldn10" /note="upstream in-frame stop codon" CDS 250..1110 /gene="Cldn10" /codon_start=1 /product="claudin-10" /protein_id="NP_001099528.1" /db_xref="GeneID:290485" /db_xref="RGD:1308027" /translation="
MSRAQISALVCGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAAGSMASTALEIIAFVVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYFANLWKMCVTDSTGVANCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGVVFILSGLCSMTGCSLYANKITTEFFDPLFMEQKYELGAALFIGWAGASLCIIGGVIFCFSISDNNKTPRMGYTYNGPTSVMSSRTKYQGGEGDFKTTGPSKQFDKNAYV"
misc_feature 424..951 /gene="Cldn10" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 407..634 /gene="Cldn10" /inference="alignment:Splign:2.1.0" exon 635..796 /gene="Cldn10" /inference="alignment:Splign:2.1.0" exon 797..878 /gene="Cldn10" /inference="alignment:Splign:2.1.0" exon 879..986 /gene="Cldn10" /inference="alignment:Splign:2.1.0" exon 987..1331 /gene="Cldn10" /inference="alignment:Splign:2.1.0" ORIGIN
caaaattcctctacaaagttttggtatctcagtagggaattagaaagattatttaggctatcgctaagatgcccttacttcactatacttaatcctaaattcccatacttggagccatcaaagtatgaagaattgtcacccaccctcatgggcgggctgtaacatttgtgggagtcctgtccagtggctgcatgcctaggccaccaaagcattcagtgtggactgtgacagcaggcaaggctgagcaacatgtccagggcgcagatctcagctctggtgtgtggcgttggagggtttggtgctcttgtcgctgccaccacatccaatgaatggaaagtgaccacccgagcatcgtccgtgataaccgccacctgggtttaccagggtctgtggatgaactgcgcagccggcagcatggctagcacggccttggaaatcatcgccttcgtcgtctccatctcgggctgggtgctggtgtcttccacactacccaccgactactggaaggtctccaccatcgatggcactgtcatcaccaccgccacttattttgccaacctgtggaagatgtgcgttaccgattccaccggtgtcgccaactgcaaggacttcccctccatgctggcgctggatggttacatccaggcgtgtagaggactaatgattgccgcggtcagcctgggcttcttcggttccatttttgcactctttggaatgaagtgtaccaaagtcggaggctcggataaagccaaagctaagattgcttgcttggctggggttgtattcatattgtcaggtctgtgttccatgacgggctgttccctgtacgcgaacaaaatcacaacggaattctttgatcccctctttatggagcaaaagtatgaattgggggctgccctcttcatcggatgggcaggagcttctctctgcatcattggcggtgtcatattttgcttttcaatatccgacaacaacaaaacacccagaatgggctacacgtacaatggacccacgtcagtcatgtcttcccggaccaagtatcaaggcggagaaggagattttaaaaccacaggcccttcaaaacagtttgataaaaatgcctatgtctaaagagctctggcaagccgcgtctcgagtttgttgcgcaagagaactgttctcacaatggtccttccaaggctcccctgtaattatcacttaagctgtttttttttttttaaaatatgaatttgaagaatgttgattggatgtaaatgttcttatagttatatactaatcatttttttctgttgtgcctttctataagggaaataaacaggttatttacagga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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