2025-07-09 14:55:19, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS NM_001105745 2407 bp mRNA linear ROD 27-JUL-2024 DEFINITION Rattus norvegicus POU class 2 homeobox 3 (Pou2f3), mRNA. ACCESSION NM_001105745 XM_001059708 XM_343378 VERSION NM_001105745.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2407) AUTHORS Glahder,J.A., Hansen,C.N., Vinther,J., Madsen,B.S. and Norrild,B. TITLE A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA JOURNAL J Gen Virol 84 (Pt 12), 3429-3441 (2003) PUBMED 14645924 REFERENCE 2 (bases 1 to 2407) AUTHORS Cabral,A., Fischer,D.F., Vermeij,W.P. and Backendorf,C. TITLE Distinct functional interactions of human Skn-1 isoforms with Ese-1 during keratinocyte terminal differentiation JOURNAL J Biol Chem 278 (20), 17792-17799 (2003) PUBMED 12624109 REFERENCE 3 (bases 1 to 2407) AUTHORS Andersen,B., Weinberg,W.C., Rennekampff,O., McEvilly,R.J., Bermingham,J.R. Jr., Hooshmand,F., Vasilyev,V., Hansbrough,J.F., Pittelkow,M.R., Yuspa,S.H. and Rosenfeld,M.G. TITLE Functions of the POU domain genes Skn-1a/i and Tst-1/Oct-6/SCIP in epidermal differentiation JOURNAL Genes Dev 11 (14), 1873-1884 (1997) PUBMED 9242494 REFERENCE 4 (bases 1 to 2407) AUTHORS Yukawa,K., Yasui,T., Yamamoto,A., Shiku,H., Kishimoto,T. and Kikutani,H. TITLE Epoc-1: a POU-domain gene expressed in murine epidermal basal cells and thymic stromal cells JOURNAL Gene 133 (2), 163-169 (1993) PUBMED 8224904 REFERENCE 5 (bases 1 to 2407) AUTHORS Andersen,B., Schonemann,M.D., Flynn,S.E., Pearse,R.V. 2nd, Singh,H. and Rosenfeld,M.G. TITLE Skn-1a and Skn-1i: two functionally distinct Oct-2-related factors expressed in epidermis JOURNAL Science 260 (5104), 78-82 (1993) PUBMED 7682011 REMARK Erratum:[Science. 1993 Dec 3;262(5139):1499.. PMID: 8248794] COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473975.1. On or before Oct 3, 2007 this sequence version replaced XM_343378.3, XM_001059708.1. ##Evidence-Data-START## Transcript exon combination :: L23862.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA5756307, SAMEA5760383 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2407 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="8" /map="8q22" gene 1..2407 /gene="Pou2f3" /note="POU class 2 homeobox 3" /db_xref="GeneID:116544" /db_xref="RGD:621691" exon 1..103 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" CDS 76..1368 /gene="Pou2f3" /note="Rov 1 pou-homeodomain protein; oct-11; transcription factor Skn-1; octamer-binding transcription factor 11; OTF-11; octamer-binding protein 11" /codon_start=1 /product="POU domain, class 2, transcription factor 3" /protein_id="NP_001099215.1" /db_xref="GeneID:116544" /db_xref="RGD:621691" /translation="
MVNLEPMHTEIKMSGDVADSTDARSTFGQVESGNDRNGLDFNRQIKTEDLGDTLQQSLSHRPCHLSQGPTMMPGNQMSGDMASLHPLQQLVLVPGHLQSVSQFLLSQTPPGQQGLQPNLLSFPQQQSTLLLPQTGPGLTSQAVGRPGLSGSSLEPHLEASQHLPGPKHLPGPGGNDEPTDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSASTPSSYPTLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPVKPPIYNSRLVSPSGSLGSLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAMNPSSAAFNSSGSWYRWNHPAYLH"
misc_feature 76..195 /gene="Pou2f3" /note="propagated from UniProtKB/Swiss-Prot (P42571.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 253..318 /gene="Pou2f3" /note="propagated from UniProtKB/Swiss-Prot (P42571.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 460..615 /gene="Pou2f3" /note="propagated from UniProtKB/Swiss-Prot (P42571.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 601..825 /gene="Pou2f3" /note="Found in Pit-Oct-Unc transcription factors; Region: POU; smart00352" /db_xref="CDD:197673" misc_feature 817..876 /gene="Pou2f3" /note="propagated from UniProtKB/Swiss-Prot (P42571.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 898..1068 /gene="Pou2f3" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1138..1314 /gene="Pou2f3" /note="propagated from UniProtKB/Swiss-Prot (P42571.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 104..172 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 173..207 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 208..312 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 313..415 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 416..498 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 499..681 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 682..823 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 824..960 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 961..1122 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 1123..1189 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 1190..1328 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" exon 1329..2407 /gene="Pou2f3" /inference="alignment:Splign:2.1.0" ORIGIN
gcttccccgggggccaggctggggcagcagcgagggacctgggggggcgctggctttggccccgcctggggcaggatggtgaatctggagcccatgcacacagagatcaagatgagtggggatgtcgctgattccacagatgcccgcagcacttttggtcaagtggagtcaggaaatgatcgaaatggcctagatttcaacagacagattaagacagaggatctgggtgacactttgcagcagagcctctcccacaggccatgccacctgagccaagggcctaccatgatgcctggaaaccaaatgtctggggacatggcttctctccatccacttcagcagcttgtgctggtccctggccacttacagtctgtatcccagtttctgctttcccagacccctcctgggcagcaaggtctgcagccgaatcttctctcctttccacagcaacagagcactctactcctcccacagacaggacctggcctcacctcccaggcagttggacgccctgggctgtcaggatcctctttagagccccacctggaagcttctcaacatctgccagggcccaagcatctgcctggccccggagggaatgacgaacccactgacctggaggagctggagaagttcgccaagaccttcaagcagaggcgcataaagctaggcttcacacagggggatgtgggattggcgatgggaaagctgtatggtaacgacttcagccagactaccatctcgagatttgaggccctcaacctgagtttcaagaacatgtgtaaactcaagccactgctggagaagtggctgaatgatgcagagtcctccccgtcagacccttcagcaagcactcccagctcgtaccccactctcagcgaagtatttggcaggaagaggaagaaacggaccagcatcgagaccaacatccgcctgactttggagaagcgatttcaagataaccctaaacccagctcggaagagatttccatgattgcggagcagttgtccatggagaaggaagtggtaagagtctggttctgcaatcgacgccaaaaggagaagagaatcaactgccctgtggccacacctgtcaagccgcccatctacaactcccggctggtctctccctcagggtctctgggctccctctcagtccctcctgtccacagcaccatgcctggaacagtaacgtcatcctgttcccctgggaacaacagcaggccctcgtctcccggctcaggactccatgccagcagccccacggcatctcaaaataactccaaagcagcaatgaacccctcctccgccgcctttaactcctcagggtcatggtaccgttggaaccatcccgcctacctccactgagaccaaaaacttcctcccgttccacctggcccctggttcccaccaggaggaagagcggccacaccttccacgtatggacagacactttgagactcggagcgggagaaatggccgctgctgaagagcaaacccacaatcttgccttctcctggatccagagcttccagagaaccaagctgtgaccaaaggccacactcttgccttgggctcttgatcaccccgctgggagtttaccgtgctcacccgtgacccgcttcatgctcacatgatggcttcacctattggagaaagggcattctgccattgttagttttcagctcaccggtgggattctgggacagccttttgctcgttgtgccaaactgcaagaagggtagattatggttttgactctgacctcagccacaatcctgaactgatccaaattctatgagaagactgaaatctcgtgtctctaccaaagccttattttgttaaattagcacagttttcttacagcatctccatttttgcccaactttcttttagcccttactcccttttctacaacaaaacctgtctatccttaggtcctacaaagtcccttcctctctacaaatggctaagctcccctctggccatgttgctccattcacgtgtactcttttgttgcccacatgttcccaagttcaagaacacttgttttttttctgttctctgtgggttttcttgtcctgtcccctctccttgctcctggccacagagaagtacacacactgtggccactttcttgtacatagtcctttcctactctgcactatgaccgttcatctttaatgtgtaatttcccagcgaaatgtttaactcaggtgtgcattttgaagatgtctctatattattttatcttctgttagaaaaggaagggggataccagagtgtggaacaccccacagagttcccacgtgagctggggttctgcagactttgtggaggaacatcgtatgtggagtctccttctgtgggtctgtgtgtaaaactgtcacatgaaagccatcccaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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