2024-04-25 13:14:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001104820 1648 bp mRNA linear VRT 24-JUN-2020 DEFINITION Oryzias latipes distal-less homeobox 2a (dlx2a), mRNA. ACCESSION NM_001104820 VERSION NM_001104820.1 KEYWORDS RefSeq. SOURCE Oryzias latipes (Japanese medaka) ORGANISM Oryzias latipes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias. REFERENCE 1 (bases 1 to 1648) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1648) AUTHORS Stock DW, Jackman WR and Trapani J. TITLE Developmental genetic mechanisms of evolutionary tooth loss in cypriniform fishes JOURNAL Development 133 (16), 3127-3137 (2006) PUBMED 16831836 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ822515.1. ##Evidence-Data-START## Transcript exon combination :: DQ822515.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00029877, SAMD00029883 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1648 /organism="Oryzias latipes" /mol_type="mRNA" /db_xref="taxon:8090" /chromosome="21" /map="21" gene 1..1648 /gene="dlx2a" /gene_synonym="dlx2" /note="distal-less homeobox 2a" /db_xref="GeneID:100049449" CDS 158..991 /gene="dlx2a" /gene_synonym="dlx2" /note="distal-less homeobox 2" /codon_start=1 /product="homeobox protein Dlx2a" /protein_id="NP_001098290.1" /db_xref="GeneID:100049449" /translation="
MTGVFENLNTDMHSNQITSNSYHSLHKSQESPTLPVSTATDSSYYNGPQPGHCTGTPFGQLGSYQYHSNATGSVPYNAKTYELGFNSSYGAYSSYGSTNSPTPPADNEKEESEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKQWKSGEIPPEQHVAASESPPCTSPPTTAWDFPQTQRMNSISSSLPQSISPPNTTAPSSFLTNYSWYSTTNSTTHLQSPLVQHHHGSAISAGTIF"
misc_feature 242..472 /gene="dlx2a" /gene_synonym="dlx2" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD:432536" misc_feature order(536..550,554..556,605..607,623..625,662..664, 668..673,680..685,689..697,701..706) /gene="dlx2a" /gene_synonym="dlx2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 542..703 /gene="dlx2a" /gene_synonym="dlx2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(542..544,551..553,671..673,680..685,692..694) /gene="dlx2a" /gene_synonym="dlx2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
ggtatcatcaaaggccgctgcgagaggagcacgcrctccgcttcttttttgtcacagtttgagcagggatgcgctttggttcaaacagctgagtcgtgtgtggtgggttttattattttttagtcgacttgatgcgcaaattttgatcaacttcaagatgactggggtttttgagaacctaaacaccgatatgcattccaaccagattacctcaaacagttaccacagcttgcacaaatcgcaggaatctccgaccctgccggtgtccacggccacggacagcagctactacaatggcccgcagcctggacactgcaccgggactccctttggccagctgggctcctatcagtaccacagcaacgccacgggttcggtgccatacaacgcaaagacctacgagcttggttttaattcgtcttatggtgcatacagctcttatggatccacgaattctcccactccccctgcagataatgagaaagaagaaagcgagccagaaatccggatggttaatggaaaaccaaagaaggtcaggaaacctcgaaccatttattccagcttccaactggctgcacttcagcggaggtttcaaaagactcagtatctggctctgccagaacgggccgagctggcagcctcactgggccttacgcaaacacaggtcaaaatctggttccaaaaccgccgctccaagttcaagaagcagtggaaaagtggagaaattcccccagagcaacatgttgctgccagcgagtctcctccgtgcacgtctccgccaacgactgcctgggactttccacagactcagagaatgaacagcatcagctcgagtttacctcagagcatcagccctcccaacacgacggcgccttcatcgtttttgacaaactactcatggtactccacgacgaactctaccacgcatctgcagtcccctctggtccagcaccatcatggctctgcaataagcgccgggacgatattttaggactggaaaaaaaaacactggggtgaaatcgggcaacaccggtgaaaaattaaaacaccaacaccttacacatttgcgcctttgtgcgcaaaacgcagcaaatggctggagtaaggttcctagaccttgccgggtttctccccgttagtagacacagattttgactgttatttttgtatttatttatttctatttgtgtgagggatgaatgaaccactactacccaaagcaatcacagactacatgggcgcaagctcacctttacgcggacgtcactttttttgggtcctttcttgtgcaaacagcagcaggacagcctttcacagatgtagcacaaattactgtattgtgccttttttcagtatgacctcatcttctcgtggggggtggggggtaaaattgtgtacattctacagttgatttaaaaacgttgagggggaggctaaacagacccacgctgtaaatattttaccacagctttatgatgtctttttttattaggctttctggaacaaattcaataatcaagtaagctactgattccccaacactctgactggcttgtatttagttcaaatttgtatttytgtctyatttattttttagcagtgttccatatggccaaaccttatttaaataaaatgtttcctgtgaatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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