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2021-10-17 16:20:26, GGRNA.v2 : RefSeq release 207 (Jul, 2021)

LOCUS       NM_001100653            3928 bp    mRNA    linear   ROD 22-JUN-2021
DEFINITION  Rattus norvegicus SID1 transmembrane family, member 1 (Sidt1),
            mRNA.
ACCESSION   NM_001100653 XM_001067387 XM_221455
VERSION     NM_001100653.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3928)
  AUTHORS   Mendez-Acevedo KM, Valdes VJ, Asanov A and Vaca L.
  TITLE     A novel family of mammalian transmembrane proteins involved in
            cholesterol transport
  JOURNAL   Sci Rep 7 (1), 7450 (2017)
   PUBMED   28785058
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3928)
  AUTHORS   Li W, Koutmou KS, Leahy DJ and Li M.
  TITLE     Systemic RNA Interference Deficiency-1 (SID-1) Extracellular Domain
            Selectively Binds Long Double-stranded RNA and Is Required for RNA
            Transport by SID-1
  JOURNAL   J Biol Chem 290 (31), 18904-18913 (2015)
   PUBMED   26067272
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AY562215.1, JACYVU010000222.1 and BE112870.1.
            On or before Dec 17, 2009 this sequence version replaced
            XM_221455.4, XM_001067387.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY562215.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840129, SAMN16418971
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2506              AY562215.1         1-2506
            2507-3485           JACYVU010000222.1  35767825-35768803
            3486-3928           BE112870.1         1-443               c
FEATURES             Location/Qualifiers
     source          1..3928
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q21"
     gene            1..3928
                     /gene="Sidt1"
                     /note="SID1 transmembrane family, member 1"
                     /db_xref="GeneID:288109"
                     /db_xref="RGD:1559616"
     exon            1..232
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..2506
                     /gene="Sidt1"
                     /note="Msid2"
                     /codon_start=1
                     /product="SID1 transmembrane family member 1 precursor"
                     /protein_id="NP_001094123.1"
                     /db_xref="GeneID:288109"
                     /db_xref="RGD:1559616"
                     /translation="
MLDCPRLALLCALPWLLRAAVPGHRAEPLKRSAELPRNPRDPARGADFDRVYSGVVSLSTENIYSFNHTSHPGQVTAVRVHVNSSSDNLDYPVLVVVRQQKQVLSWQVPLPFQGLYQRSYNYQEVSRTLCPSKATNETGPLEQLIFVDVASMAPHGAHYKLLVTKIKHFQLRTNVAFYFTASPSQPQYFLYKFPEDVDSVIIKVVSEKAYPCSVVSVQNIMCPVYDLDHDVEFNGVYQSMTKQAAITLQKDFPDEQFFVVFVIKPEDYACGGSFSIQENENQTWNLQRSKNLKVTIVPSVKGSVYVKSSLFSVFVFLSFYLGCLLVVFVHHMRFQRKPVDGSFGSGDGSGNMAVSHPITASTPEGSNYGAIDESSSSPGRQMSSSDGGQPCHSDTDSSVEESDFDTMPDIESDKNVIRTKMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVMQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDLLHRRALEAKDIFAMEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVITLTVLGVVFGKNDVWFWIIFSAIHVLASLALSTQIYYMGRFKIDVSDTDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLIVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPLPVFCIVATAVVWAAALYFFFQNLSSWEGTPAESREKNRECVLLGFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF"
     sig_peptide     11..67
                     /gene="Sidt1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    209..211
                     /gene="Sidt1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6Q3F5.2); glycosylation site"
     misc_feature    257..259
                     /gene="Sidt1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0007744|PubMed:24090084; propagated from
                     UniProtKB/Swiss-Prot (Q6Q3F5.2); glycosylation site"
     misc_feature    416..418
                     /gene="Sidt1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6Q3F5.2); glycosylation site"
     misc_feature    569..2440
                     /gene="Sidt1"
                     /note="dsRNA-gated channel SID-1; Region: SID-1_RNA_chan;
                     pfam13965"
                     /db_xref="CDD:290673"
     misc_feature    851..853
                     /gene="Sidt1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6Q3F5.2); glycosylation site"
     misc_feature    935..997
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    1070..1234
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1334..1396
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    1418..1420
                     /gene="Sidt1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6Q3F5.2); glycosylation site"
     misc_feature    1490..1552
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    1631..1693
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    1706..1708
                     /gene="Sidt1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6Q3F5.2); glycosylation site"
     misc_feature    1724..1777
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    1808..1870
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    1886..1948
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    2072..2134
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    2153..2215
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    2246..2308
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     misc_feature    2312..2314
                     /gene="Sidt1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6Q3F5.2); glycosylation site"
     misc_feature    2396..2458
                     /gene="Sidt1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Q3F5.2);
                     transmembrane region"
     exon            233..354
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            355..525
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            526..571
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            572..673
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            674..757
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            758..842
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            843..914
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1008
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1052
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..1124
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1125..1270
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1344
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1411
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1412..1485
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1486..1609
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..1727
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1728..1864
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1865..1973
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1974..1988
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            1989..2065
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            2066..2112
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2218
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            2219..2329
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            2330..2443
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     exon            2444..3913
                     /gene="Sidt1"
                     /inference="alignment:Splign:2.1.0"
     STS             3709..3874
                     /gene="Sidt1"
                     /standard_name="AI101806"
                     /db_xref="UniSTS:261179"
ORIGIN      
ggcgcccatcatgctcgactgcccgcggctggcgctgctctgcgcgctgccctggctcctacgggcggcggtccctggccaccgggcagagcccctcaagcggtcggcagagctgccccgcaatccgcgcgaccccgccagaggagcggatttcgatcgcgtctacagcggcgtggtgagtctcagcaccgagaacatctactccttcaaccacaccagccatcctggccaggtgacagccgtgcgggtgcatgtcaacagttcctctgacaacctggactacccagtcctggttgtggttcgccaacagaaacaagtgttgtcctggcaggttcctctgcccttccaaggactataccaaaggagctacaactaccaggaagtcagccgcactctatgtccttctaaagcaaccaatgagaccggccctttggaacagctgatctttgtcgacgtagcatccatggctccccacggtgcccactacaagttgctggtcaccaaaatcaagcacttccagctccggacgaatgttgccttctacttcactgccagcccctctcaacctcagtattttctatacaaatttcctgaagatgtggactccgttatcattaaagtggtgtctgagaaggcttatccgtgttcagttgtctccgttcagaacatcatgtgtccagtgtatgatttagaccatgatgtggaattcaatggtgtctatcagtccatgaccaaacaagctgccatcacgctgcagaaggattttccagatgagcagttcttcgtggtgtttgtgataaagcctgaagattatgcatgtggtggatcattctccatccaagaaaatgaaaatcagacctggaacctacaacgatcaaagaacctgaaagtgaccattgtcccatctgtcaaaggatctgtgtatgtgaaatctagtcttttcagcgtattcgttttcttgtccttctacttgggctgcctgctggtcgtgtttgtccatcacatgaggttccagaggaaacccgttgatggaagctttggctccggtgatggctctggaaatatggctgtctcacatcccatcacggccagtacacctgaagggagcaattatggggcaatagacgagtcgagttccagtcctggaaggcagatgtcttcttccgatggtgggcagccatgccactcagacacggacagctctgtggaggagagtgacttcgacactatgccagacatcgaaagtgacaaaaacgtcatccggaccaagatgttcttgtacctgtctgatctgtccaggaaagaccggaggattgtcagcaaaaaatataagatttatttttggaatatcatcaccatcgctgtgttttatgccctgcctgtgatgcagctggtcatcacctaccagacagtggtaaatgtcactggcaaccaggacatctgttactacaacttcctctgtgctcaccccctgggcgtcctgagcgccttcaataatattctcagtaacctgggccacgtcctcctgggcttcctcttcctgctgatagtgctgcgccgtgaccttctccaccgaagagccctggaggctaaagacatctttgctatggagtatggaattcccaaacactttggtctcttctacgccatggggatcgcgctgatgatggaaggcgtgctcagtgcttgttaccatgtctgccctaattactccaacttccagttcgacacctccttcatgtacatgattgccggcctctgcatgctgaagctctaccagacccgccacccggacatcaatgccagcgcctactctgcctatgcctccttcgctgtggtcatcacactcacggtcctcggagtggtatttggaaaaaacgatgtgtggttctggatcatcttctccgctatccacgtccttgcttctctggccctcagcacccaaatctactacatgggccgtttcaagatagatgtgtccgacacagatctgggaatcttccggcgcgctgctatggtgttctacacggactgtatccagcaatgcagcagacctctgtatatggacaggatggtgttgctcattgtgggaaatctggttaactggtcctttgccctctttggattgatctaccggcccagggactttgcctcctacatgctgggcatcttcatctgcaacctgctgctctacttggctttctacatcatcatgaagcttcgaagctctgagaaggtcctccccctaccagtcttctgcatcgtggccactgctgtggtgtgggctgcggccctgtactttttcttccagaacctcagcagctgggagggaactccagccgaatcccgggagaagaaccgagagtgtgtcctgctgggtttctttgatgaccatgacatctggcacttcctttctgctactgccctgtttttctcattcctggtgttgttgactctggatgacgaccttgatgtggtccgcagagaccagatccctgtcttctgagccccccggcatcacaggggggaaagggagcaatccaccttggtgctgttttgtggaaaatatggtgagtgcagcagcaagcccactgccagacactccacttgcctcagggggagtccacggtgtctgaattcacgcaggaagagcctggggctgagctaagcctcaagaagaatggaagaaggaaaggcctgttgtgcacagagacaaagctgggtggctgcagaacctctctttgtggcttagagttcagtctagaacacaaggtgcatcaggccagcccatcctcactgaccttggccagagaaaccagctcctcccacctcccacctcgatccttcagtgtggccacttccacacctctgagacacctgctgctatagaaggccaaagcaccatctcattctcattctcccctgaccctcagatgactggattcctcagaatatggtgcagaagtgggaccaagtccccacccaactggggacagacattctactaactcgagttaggtcacctcatcagaaggaaagctgaattcctggcaccactggaaatgctctgggtgggatacttctgaacagatcaccttggttgggcccgtttcttaatgtcttcatctcaccattggaggttgactctgcactctactactgcctccctagaaggcccctctttctccatagacttctaacagctccaagatggacacaaatagagaaaatgctttctacaacaaaagtgatggacagtgcttagtggccaagcatcggacagacagcattcacctaaatgacttttatcctggagcaaattcaacaaagcaacagtgtttggtggtccccagacacacagctcagcctgtgcccatacagccttttcgtggacataagtgttccccagcagtattactccggtgtcctccacaactgaacctgtctgtcgcttatgtagatcagggttccaggcgacctgcctgaagttttcagcagtaactcaggatggacacatgagtcacagaggttgcgtctatccagtcacctctgactgtatcccattttcacactgcccccaggaggatgtagaaaagcgcaatgttccagctttcttctcttgtgccatctggcacacccctattctgaccaggcctcccagttgtgtagagtatgacatcatcagaaaatagacacacaagtgtgtgcacccatgcctacttgcttgtgatattgaagtcacttctcgcctgtgctttcttgaacatttagtaaggaaatggatcagacattcctcttttttaaaaaagaactatcattctttctctcaaatatctgtgtccaaatatgtgctttggaagtttgaacagcaagcttttcctggttttaaaaatgcaaagataatctccatgaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]