2024-04-24 20:57:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001098096 2014 bp mRNA linear MAM 03-FEB-2022 DEFINITION Bos taurus claudin 8 (CLDN8), mRNA. ACCESSION NM_001098096 XM_582512 VERSION NM_001098096.1 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 2014) AUTHORS McMillan M, Andronicos N, Davey R, Stockwell S, Hinch G and Schmoelzl S. TITLE Claudin-8 expression in Sertoli cells and putative spermatogonial stem cells in the bovine testis JOURNAL Reprod. Fertil. Dev. 26 (5), 633-644 (2014) PUBMED 23673210 REMARK GeneRIF: We found that CLDN8 was expressed by both spermatogonia and a subset of Sertoli cells in the bovine testis. REFERENCE 2 (bases 1 to 2014) AUTHORS Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol. 10 (4), R42 (2009) PUBMED 19393038 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC134660.1. On May 24, 2007 this sequence version replaced XM_582512.3. ##Evidence-Data-START## Transcript is intronless :: BC134660.1, SRR6764281.18045.1 [ECO:0000345] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2014 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="1" /map="1" /breed="L1 Hereford" gene 1..2014 /gene="CLDN8" /note="claudin 8" /db_xref="BGD:BT29403" /db_xref="GeneID:538761" /db_xref="VGNC:VGNC:27419" exon 1..1990 /gene="CLDN8" /inference="alignment:Splign:2.1.0" misc_feature 67..69 /gene="CLDN8" /note="upstream in-frame stop codon" CDS 88..765 /gene="CLDN8" /codon_start=1 /product="claudin-8" /protein_id="NP_001091565.1" /db_xref="BGD:BT29403" /db_xref="GeneID:538761" /db_xref="VGNC:VGNC:27419" /translation="
MATYALQIAGLVLGGVGMVGTVAATVMPQWRVSAFIESNIVVFENLWEGLWMSCMRHANIRMQCKIYDSLLALSPDLQAARGLMCAASVLAFLAFLTAVLGMKCTRCAGDDDKVKGHILLTAGVIFIITGLVVLIPVSWVANSIIRDFYNPIVDIAQKRELGEALYIGWTTALVLIVGGALFCCVSCCHEKSSSYRYSIPSHRTTQKSYHAEKKSPSVYSKSQYV"
misc_feature 100..633 /gene="CLDN8" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
gctctccctcggggcgcagagaacctggcttcagagcagccttaccagctcaggcgcctggtcggataaaacccaacctggaggagaatggctacctacgccctgcaaatcgccggactggtgctcggtggtgtgggcatggtgggcacagtggctgccacggtcatgcctcagtggagagtgtctgccttcattgaaagcaatattgtggtctttgaaaacctctgggaaggactatggatgagttgcatgaggcatgctaacatcagaatgcagtgcaaaatctacgactcgctgctggctctctctccggacctacaggcagccagaggactgatgtgtgccgcctcggtgctggccttcttggctttcctgacggccgtcctcggcatgaagtgtaccagatgcgccggggacgacgacaaggtgaaaggtcacattctgctgaccgctggagtgattttcatcatcactggcctcgtggtgctcatccccgtgagctgggttgccaattccatcatcagagacttctacaacccaatagtggatattgcccagaaacgggagctgggagaagccctctacataggctggaccacggccctggtgctgattgttggaggggcgctgttctgttgcgtttcctgttgccatgaaaagagcagtagctacagatactccataccgtcccaccgaacaacccagaaaagctatcacgccgaaaagaagtcgccgagtgtgtactccaaaagtcagtacgtgtagttatgactctttttaaactacctagaaagccacccagatgacatagatgtccactcttcccaaaactgagacccaaaagaacattgattggctgttcttaactgcctggtattaatcacagggactgattacatcagctctttatgattctataatcaatttcagctgcatgagaaattgtacacattgctttgattattctagaaagaacagtaatttgttttctaaaatggttcatgttttatctccttttattagttacttcaaaatgacattgttggagacaattattttacaactgtgatttctctatgacagagcattatgtatatagatgagtgtaacatttctgtgtcacataggtagagacaggcttatatagtcctattttaaatgaaacactgattcattacactgaataaatagaattcagctattgcttttcaggggaaccaggggtaagattgaagaaggttaatattaattgtttaaaaacagcttagtgatgaatgcacttaatttataatgaaggttaaaatgaaagctttaatcagcagggtaaagggaactaaatggctttttgatatctcgtttttcagcctaggagttagaaatccaaattcctttttcctcattccccagaggccttccttttcttgtatattaaatggtcatcttttaaaaggcagatattttgtcaaggggctttgcattcaaactgcttttccagagctatactaagaagaaagataaagctatagtctaagaaatattaaagacttcaggaaagtgaagatttttttcctcaagtttttgtggttggagaaggatacattttgacaagaaatcatatatatatatatattttaataactatttgtatagagactttggactttcattaatataaataacagaagagaaaaattatatacctttatttgattaccaaaaaaatgaaaccaaattgtcctctgtgaactacatcttatatgtggatatttaagtcagaattgtcatttcagttttcaaaggtgaatctttctttgttccaattttgttcagttttactaaggcacaggtatactatatttttgtgtttcccccagattttattgaactgttaatctgatttgaaagtttgtatatacatttttctagcttaatcaactatgtgtatctgctttatgtcctttgtattaataaattgtgctttttatattaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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