2024-04-25 06:02:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001096633 1465 bp mRNA linear VRT 20-NOV-2021 DEFINITION Xenopus laevis engrailed homeobox 1 L homeolog (en1.L), mRNA. ACCESSION NM_001096633 VERSION NM_001096633.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 1465) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev Dyn 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC106393.1. ##Evidence-Data-START## Transcript exon combination :: BC106393.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00012418, SAMD00012419 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1465 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="9_10L" /map="9_10L" gene 1..1465 /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /note="engrailed homeobox 1 L homeolog" /db_xref="GeneID:735177" /db_xref="Xenbase:XB-GENE-6254268" exon 1..584 /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /inference="alignment:Splign:2.1.0" misc_feature 104..106 /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /note="upstream in-frame stop codon" CDS 215..904 /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /note="engrailed 1; En-1a homeobox protein; Homeobox protein en-1-A" /codon_start=1 /product="homeobox protein engrailed-1-A" /protein_id="NP_001090102.1" /db_xref="GeneID:735177" /db_xref="Xenbase:XB-GENE-6254268" /translation="
MEDQTDQSPGAPSEPDPGASPPPLHPVLPTHRTTNFFIDNILRPDFGCRKETPGRGNSSPLHTRPGNPAPSPDSDTPSDSSKGSDSNPALLLVGNAAPPVHKKDSVVWPAWVYCTRYSDRPSSGPRTRKLKKKKSEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQSLAQELSLNESQIKIWFQNKRAKIKKASGMKNGLALHLMAQGLYNHSTTTVQEKEQESE"
misc_feature order(635..646,650..652,701..703,719..721,758..760, 764..769,776..781,785..793,797..802) /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 638..799 /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(638..640,647..649,767..769,776..781,788..790) /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 803..895 /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /note="Engrailed homeobox C-terminal signature domain; Region: Engrail_1_C_sig; pfam10525" /db_xref="CDD:431338" exon 585..1438 /gene="en1.L" /gene_synonym="en-1; En-1A; en1-a; en1-b; en1a; eng1; engrailed-1; xen1" /inference="alignment:Splign:2.1.0" ORIGIN
gttccagtctgtctctctgtactgagtgtcccatttcgggtgctgtttggtggggtctagaccagaggttgcaggtttaagtgtgagggttgcaggctacagttaggggaccaggcgcttcattagagggttgggggctacttactttgctgctgcagccccacgcagtgcagggcccctagagaaggtggtcccggggctggagggcgataacatggaggatcaaactgatcaaagccccggggccccaagtgagccagatccaggggcctcacctccccctctgcaccctgtgctccccactcaccggaccactaacttcttcatagacaacattctccggccggactttggctgcaggaaagagacccccgggaggggcaactccagccccctgcacacccgcccgggcaaccctgctccgagcccagactctgacaccccatcagacagttccaagggcagcgactccaacccggctctgctcctggtgggcaacgcggcgccccctgtgcacaagaaagactctgtggtgtggcccgcctgggtctattgcactcgctactccgaccgaccctcctctggccctaggacccgcaagctaaaaaagaagaagagcgagaaggaagacaagaggccccgaacagccttcactgctgagcagctccagagactgaaggctgagttccaagccaaccgctacatcacagagcagaggagacagagcttggcccaagagctgagcctcaatgaatcccaaataaagatctggttccagaacaaaagggccaagatcaaaaaggcatcggggatgaagaatggcctggctctccatctcatggctcagggactgtacaaccactccactactactgtgcaggagaaggagcaggagagtgagtgaaggggcagcacccccagtgactatgccaatgttctactactactgtgcaggacaatgagcaacaggggtaactctgccaagtgactctgaagctgtcgttccgctactgggcaggagagtgagtaaatgggacagcctagtctggtgccagtactatttgttattgtgcagcacagactttgggaaaattcacccagcaacagggaaatctcctgctcttgttgtcccattgtggtgcccaatgaaatccccccattatatggatacaacgaactccctcagagtatggacccaacagatgtaccttttgctgtatggaccccagtgttcccccttatcaattccagggtttttgactgttccccatttgactgcagaaccagtttctgggcaccccacaaatggaggtgttgaactgtcctttcaagccaaagattttctgctgttggagttgtgtaaccttaataaagagtgcgttgtgcccggacccgactgcccgtaacttatttgctaataaatcctgaggcaatcacaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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