2024-03-28 19:35:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001091502 3564 bp mRNA linear VRT 24-JUN-2020 DEFINITION Xenopus laevis NRDE-2, necessary for RNA interference, domain containing L homeolog (nrde2.L), mRNA. ACCESSION NM_001091502 VERSION NM_001091502.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 3564) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC070786.1. ##Evidence-Data-START## Transcript exon combination :: BC070786.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00012418, SAMD00012419 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3564 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="8L" gene 1..3564 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /note="NRDE-2, necessary for RNA interference, domain containing L homeolog" /db_xref="GeneID:432030" /db_xref="Xenbase:XB-GENE-960405" exon 1..73 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" misc_feature 4..6 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /note="upstream in-frame stop codon" CDS 13..3417 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /codon_start=1 /product="NRDE-2, necessary for RNA interference, domain containing L homeolog" /protein_id="NP_001084971.1" /db_xref="GeneID:432030" /db_xref="Xenbase:XB-GENE-960405" /translation="
MALFPAFADSSSSEKHPTRQELDWLSNKSFCTEDALSLHQRTLQSALSPQPASHSPSRSPLQPGLSEESGTDSRSTKKKKKKKKKKQKKKHKKKRDYEEDEEGNTSDSDSSPEIRESTATERVARQDTCVVLPGRGIWLDEAQSVTEETFRIDKKSDPANWEYKSLYRGDIARYKRKGNSCLGINPKKQQIIWQDTLSKKKQPQRKIERYFTKSTVQLLRAKADFVSCKESASRNAGDFIPVLDPDMDGVVSSSGPISWVNPLGVYDSSTALWLEGKGGPEYETIQPVPRDNNILAKVEDYNKRLRECPSDIQLWMEFVSFQDELVKQPSMYSTSKGELESHRTSVKLLLEKKLAILERSIESNPGSTELKLAKLKLCEEFWEAPALLKEWQKLIFLHPNDSQLWQKYLLFCQGQFSTFSVSKMNGVYGKCLSTLAAVQDGSMLSHNALPDTDRQMYDIFLQQCQFLRQAGHTEKAISLFQALTDFTFYKPDTVKHMTTKEQVDFFEPFWDSGEPRFGEKGAKGWSSWMRQQERGGWVTINNLVGDDEDEADEEFNIKDKTCPRYKIWLDIEYSREARHWLPWHPDPTKKQTEDDCEDPERQVLFDDIGPSMFKIDSPQLQFQLLQSFLHFVGVPCGAHLSLYCFYLFLDETSIFDHVSPYERLLTSFEIPLSGIGTVGHLDTISRSRQQIGHFKEGETFIQNIFQSALSLLQGEEKRKLSVWWLRYEISKVVWWLQAKNKKKLKSQGKRSKRLAKGLLKESSNRNSLALWKEYALLEWLLGNIDDARKVFDTAISLAGSKGLKDQELCSLCLLYSELEGKILDNPEQNAGSRAVHILTSLTESSPYIPYSSPEHAVSILKARKVYEHALQDCLMQEPHWGRVSLSGCFALFQYLTVSVDAAVAVLRQAADSQLIPETPYNIERNSDCPLQAITLMHTNLLRHHYKASVYPLRPLRETLMSALKLYPTNVSLWKSYIMTESKLHNASKVRRFIDSIRRVTSALEPCLFAIRAEEDRRKLVDSVQRAELGEVHSIFPETGLSNRIKALFEHALQSEYGSRCPLLWRQYLYFMVSIKERSKGLFYKAIQSCPWAKALYLDAVEYFPEQLQETIDLMTEKELRVRVPLEELDLLLED"
misc_feature 457..744 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(457..483,490..495,505..510,514..516,520..564, 571..579,583..591,613..621,631..636,640..645,652..672, 694..705,715..744) /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 913..1911 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" exon 74..182 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 183..386 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 387..530 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 531..978 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 979..1384 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 1385..1518 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 1519..1642 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 1643..1818 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 1819..2205 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 2206..3086 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 3087..3225 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 3226..3291 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" exon 3292..3542 /gene="nrde2.L" /gene_synonym="c14orf102; nrde2" /inference="alignment:Splign:2.0.8" ORIGIN
ggttgagaagcaatggcactgtttccagcctttgcagactctagttctagtgagaaacatccaacacgccaagagttggactggctgagcaacaagagcttctgcacagaagatgccctatcactacatcagcgcactttacagtctgcactctctcctcagcctgcatcccactcacccagcaggagtccgttacagccaggattgtcagaggaaagtggaacagattctcggtcaacaaagaagaagaaaaagaagaaaaaaaagaaacagaaaaaaaagcacaagaaaaagagggattatgaggaggatgaagaagggaatacaagtgactctgactcaagtcctgagataagggaatctacagccactgaaagggtagcaaggcaggacacttgtgttgtgctccctggccgtggtatatggctagatgaagcacagtctgtgacagaggagacatttcgaattgataagaaatctgaccctgccaactgggaatataagtcactgtaccgaggagacatagcacgctacaaacgtaaaggaaattcctgtcttggcattaacccaaagaagcagcaaattatttggcaggatacattatctaagaagaaacagcctcagaggaaaattgagcgctattttaccaagagcacagtgcagcttctcagagccaaagcagattttgtgtcttgtaaagaaagtgcaagtcggaatgcaggggactttattcccgtcttggatcctgatatggatggtgttgtttcctccagtggccccattagttgggtgaatcctttgggagtttatgattcttctacagctctgtggttggaaggaaaagggggcccagaatatgaaaccatacagccagtaccccgggacaacaatattttagcaaaggtggaggattataataagcggctcagagaatgtccgagcgatatccagctatggatggagtttgtctctttccaggatgagctggtgaagcagcctagcatgtattctactagcaaaggagagcttgaaagccatcggacatctgtgaagttgttactggaaaagaaactagccatactagagagatccattgagagtaatccgggcagcactgaattgaagcttgcaaagctaaaactgtgtgaggaattctgggaggcacctgctcttctgaaggaatggcagaaactgatcttcttgcacccaaatgactcgcagctgtggcagaaatacctactcttctgccaggggcagtttagcactttctctgtgtccaagatgaatggtgtttatggcaaatgcctaagcaccctggcagcagttcaggatggcagtatgctttcccacaatgctctgccagacacagatcgccaaatgtatgatattttcctgcaacagtgccagtttttacgccaggctggacacaccgagaaagcaatatctttgttccaggccctgacagacttcacattttataaaccggacactgttaagcacatgacaaccaaagagcaggttgacttttttgagcctttttgggacagtggggaacctcgttttggtgagaaaggagcaaagggatggagctcctggatgcgtcaacaggagagagggggctgggtcaccattaacaacttggtgggggatgatgaagatgaagcagatgaagagttcaacataaaagacaaaacctgccccagatacaagatttggttggacattgaatactcacgggaagccagacactggttgccatggcatccagacccaactaaaaagcagacagaggacgactgtgaggacccagaaaggcaggtgctctttgatgacattggtccatcaatgttcaagattgacagtcctcaactgcagttccaactgttacagtctttcctgcactttgtgggggtcccctgtggggcacacctttccttatactgcttttatctttttcttgacgagacctccatctttgatcatgtttctccatatgaaaggctgcttacttcatttgaaatccctctgtccggaatcggaacagttggtcatttagacacaataagcagaagcagacagcaaataggacactttaaagaaggtgaaaccttcatacaaaacatcttccagtcagctctgtcacttttacaaggagaagagaaaaggaagctctctgtctggtggcttcggtatgaaatttcgaaggttgtttggtggctgcaagcaaaaaacaagaaaaagttgaaatctcagggcaagaggagtaagcgattggcaaagggtctactaaaggaatcatctaacagaaacagtctggcactctggaaagaatatgccctactggaatggcttctgggcaatattgatgatgcccgaaaggtgtttgatacagccataagcttagcaggaagcaaagggttaaaggaccaggaattatgcagtctgtgcctgctgtattcagaactggaagggaagatactggacaatccagagcaaaatgcagggtcccgtgctgttcatatactaaccagccttacagaaagctccccttacatcccctatagtagccctgagcatgctgttagtattcttaaagcacgcaaggtatacgaacacgctttgcaggactgcctgatgcaagagccacactgggggcgtgtgagcttatctggctgctttgcactttttcagtatcttacggtgagtgttgatgctgctgttgcagtattaagacaggctgctgactcacagttgattcctgaaacaccgtacaatattgaacggaactccgactgccccttgcaagcaatcacattgatgcacacaaatctgctcaggcaccattataaggccagtgtctatcctctgaggccacttagagaaacactgatgtctgccttaaagctgtatcccacaaatgtttctttgtggaaatcctacatcatgacagaaagtaaattacacaatgccagcaaagtgagacggtttatagacagcatcaggagagtgacatcagctctggaaccatgtctgtttgccattagggccgaggaagacagaagaaaactggtagactctgtgcaacgggcagaactaggggaggttcactccattttccctgaaactggtttgtcaaatcgaatcaaggccctgtttgaacatgctcttcaaagtgaatatggttccagatgccctctactctggagacagtacttgtactttatggtatctatcaaggagagaagcaaaggcctgttctacaaagcaatacagagctgcccatgggcaaaggcactgtatctggatgctgtagaatatttcccagagcagctacaagagaccattgatctaatgactgaaaaggagttgagagtacgagttcccctagaggaattggatcttctgctggaagattaaacaatggaacgattgaaatgtttctgtttgggttacatctataatgcaacaaacgtgtacaatacattttatataatatgtatatttttaagaaaaaaaacaataaaatgtgtccacaccctccaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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