GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2019-03-26 16:05:12, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_001091502            3564 bp    mRNA    linear   VRT 28-OCT-2016
DEFINITION  Xenopus laevis NRDE-2, necessary for RNA interference, domain
            containing L homeolog (nrde2.L), mRNA.
ACCESSION   NM_001091502
VERSION     NM_001091502.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 3564)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC070786.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC070786.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMD00012418, SAMD00012419
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3564
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="8L"
     gene            1..3564
                     /gene="nrde2.L"
                     /gene_synonym="c14orf102; nrde2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing L homeolog"
                     /db_xref="GeneID:432030"
                     /db_xref="Xenbase:XB-GENE-960405"
     misc_feature    4..6
                     /gene="nrde2.L"
                     /gene_synonym="c14orf102; nrde2"
                     /note="upstream in-frame stop codon"
     CDS             13..3417
                     /gene="nrde2.L"
                     /gene_synonym="c14orf102; nrde2"
                     /codon_start=1
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing L homeolog"
                     /protein_id="NP_001084971.1"
                     /db_xref="GeneID:432030"
                     /db_xref="Xenbase:XB-GENE-960405"
                     /translation="
MALFPAFADSSSSEKHPTRQELDWLSNKSFCTEDALSLHQRTLQSALSPQPASHSPSRSPLQPGLSEESGTDSRSTKKKKKKKKKKQKKKHKKKRDYEEDEEGNTSDSDSSPEIRESTATERVARQDTCVVLPGRGIWLDEAQSVTEETFRIDKKSDPANWEYKSLYRGDIARYKRKGNSCLGINPKKQQIIWQDTLSKKKQPQRKIERYFTKSTVQLLRAKADFVSCKESASRNAGDFIPVLDPDMDGVVSSSGPISWVNPLGVYDSSTALWLEGKGGPEYETIQPVPRDNNILAKVEDYNKRLRECPSDIQLWMEFVSFQDELVKQPSMYSTSKGELESHRTSVKLLLEKKLAILERSIESNPGSTELKLAKLKLCEEFWEAPALLKEWQKLIFLHPNDSQLWQKYLLFCQGQFSTFSVSKMNGVYGKCLSTLAAVQDGSMLSHNALPDTDRQMYDIFLQQCQFLRQAGHTEKAISLFQALTDFTFYKPDTVKHMTTKEQVDFFEPFWDSGEPRFGEKGAKGWSSWMRQQERGGWVTINNLVGDDEDEADEEFNIKDKTCPRYKIWLDIEYSREARHWLPWHPDPTKKQTEDDCEDPERQVLFDDIGPSMFKIDSPQLQFQLLQSFLHFVGVPCGAHLSLYCFYLFLDETSIFDHVSPYERLLTSFEIPLSGIGTVGHLDTISRSRQQIGHFKEGETFIQNIFQSALSLLQGEEKRKLSVWWLRYEISKVVWWLQAKNKKKLKSQGKRSKRLAKGLLKESSNRNSLALWKEYALLEWLLGNIDDARKVFDTAISLAGSKGLKDQELCSLCLLYSELEGKILDNPEQNAGSRAVHILTSLTESSPYIPYSSPEHAVSILKARKVYEHALQDCLMQEPHWGRVSLSGCFALFQYLTVSVDAAVAVLRQAADSQLIPETPYNIERNSDCPLQAITLMHTNLLRHHYKASVYPLRPLRETLMSALKLYPTNVSLWKSYIMTESKLHNASKVRRFIDSIRRVTSALEPCLFAIRAEEDRRKLVDSVQRAELGEVHSIFPETGLSNRIKALFEHALQSEYGSRCPLLWRQYLYFMVSIKERSKGLFYKAIQSCPWAKALYLDAVEYFPEQLQETIDLMTEKELRVRVPLEELDLLLED"
     misc_feature    910..1911
                     /gene="nrde2.L"
                     /gene_synonym="c14orf102; nrde2"
                     /note="NRDE-2, necessary for RNA interference; Region:
                     NRDE-2; pfam08424"
                     /db_xref="CDD:285605"
ORIGIN      
ggttgagaagcaatggcactgtttccagcctttgcagactctagttctagtgagaaacatccaacacgccaagagttggactggctgagcaacaagagcttctgcacagaagatgccctatcactacatcagcgcactttacagtctgcactctctcctcagcctgcatcccactcacccagcaggagtccgttacagccaggattgtcagaggaaagtggaacagattctcggtcaacaaagaagaagaaaaagaagaaaaaaaagaaacagaaaaaaaagcacaagaaaaagagggattatgaggaggatgaagaagggaatacaagtgactctgactcaagtcctgagataagggaatctacagccactgaaagggtagcaaggcaggacacttgtgttgtgctccctggccgtggtatatggctagatgaagcacagtctgtgacagaggagacatttcgaattgataagaaatctgaccctgccaactgggaatataagtcactgtaccgaggagacatagcacgctacaaacgtaaaggaaattcctgtcttggcattaacccaaagaagcagcaaattatttggcaggatacattatctaagaagaaacagcctcagaggaaaattgagcgctattttaccaagagcacagtgcagcttctcagagccaaagcagattttgtgtcttgtaaagaaagtgcaagtcggaatgcaggggactttattcccgtcttggatcctgatatggatggtgttgtttcctccagtggccccattagttgggtgaatcctttgggagtttatgattcttctacagctctgtggttggaaggaaaagggggcccagaatatgaaaccatacagccagtaccccgggacaacaatattttagcaaaggtggaggattataataagcggctcagagaatgtccgagcgatatccagctatggatggagtttgtctctttccaggatgagctggtgaagcagcctagcatgtattctactagcaaaggagagcttgaaagccatcggacatctgtgaagttgttactggaaaagaaactagccatactagagagatccattgagagtaatccgggcagcactgaattgaagcttgcaaagctaaaactgtgtgaggaattctgggaggcacctgctcttctgaaggaatggcagaaactgatcttcttgcacccaaatgactcgcagctgtggcagaaatacctactcttctgccaggggcagtttagcactttctctgtgtccaagatgaatggtgtttatggcaaatgcctaagcaccctggcagcagttcaggatggcagtatgctttcccacaatgctctgccagacacagatcgccaaatgtatgatattttcctgcaacagtgccagtttttacgccaggctggacacaccgagaaagcaatatctttgttccaggccctgacagacttcacattttataaaccggacactgttaagcacatgacaaccaaagagcaggttgacttttttgagcctttttgggacagtggggaacctcgttttggtgagaaaggagcaaagggatggagctcctggatgcgtcaacaggagagagggggctgggtcaccattaacaacttggtgggggatgatgaagatgaagcagatgaagagttcaacataaaagacaaaacctgccccagatacaagatttggttggacattgaatactcacgggaagccagacactggttgccatggcatccagacccaactaaaaagcagacagaggacgactgtgaggacccagaaaggcaggtgctctttgatgacattggtccatcaatgttcaagattgacagtcctcaactgcagttccaactgttacagtctttcctgcactttgtgggggtcccctgtggggcacacctttccttatactgcttttatctttttcttgacgagacctccatctttgatcatgtttctccatatgaaaggctgcttacttcatttgaaatccctctgtccggaatcggaacagttggtcatttagacacaataagcagaagcagacagcaaataggacactttaaagaaggtgaaaccttcatacaaaacatcttccagtcagctctgtcacttttacaaggagaagagaaaaggaagctctctgtctggtggcttcggtatgaaatttcgaaggttgtttggtggctgcaagcaaaaaacaagaaaaagttgaaatctcagggcaagaggagtaagcgattggcaaagggtctactaaaggaatcatctaacagaaacagtctggcactctggaaagaatatgccctactggaatggcttctgggcaatattgatgatgcccgaaaggtgtttgatacagccataagcttagcaggaagcaaagggttaaaggaccaggaattatgcagtctgtgcctgctgtattcagaactggaagggaagatactggacaatccagagcaaaatgcagggtcccgtgctgttcatatactaaccagccttacagaaagctccccttacatcccctatagtagccctgagcatgctgttagtattcttaaagcacgcaaggtatacgaacacgctttgcaggactgcctgatgcaagagccacactgggggcgtgtgagcttatctggctgctttgcactttttcagtatcttacggtgagtgttgatgctgctgttgcagtattaagacaggctgctgactcacagttgattcctgaaacaccgtacaatattgaacggaactccgactgccccttgcaagcaatcacattgatgcacacaaatctgctcaggcaccattataaggccagtgtctatcctctgaggccacttagagaaacactgatgtctgccttaaagctgtatcccacaaatgtttctttgtggaaatcctacatcatgacagaaagtaaattacacaatgccagcaaagtgagacggtttatagacagcatcaggagagtgacatcagctctggaaccatgtctgtttgccattagggccgaggaagacagaagaaaactggtagactctgtgcaacgggcagaactaggggaggttcactccattttccctgaaactggtttgtcaaatcgaatcaaggccctgtttgaacatgctcttcaaagtgaatatggttccagatgccctctactctggagacagtacttgtactttatggtatctatcaaggagagaagcaaaggcctgttctacaaagcaatacagagctgcccatgggcaaaggcactgtatctggatgctgtagaatatttcccagagcagctacaagagaccattgatctaatgactgaaaaggagttgagagtacgagttcccctagaggaattggatcttctgctggaagattaaacaatggaacgattgaaatgtttctgtttgggttacatctataatgcaacaaacgtgtacaatacattttatataatatgtatatttttaagaaaaaaaacaataaaatgtgtccacaccctccaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]