2021-01-20 05:24:57, GGRNA.v2 : RefSeq release 203 (Nov, 2020)
LOCUS NM_001089976 2376 bp mRNA linear VRT 24-JUN-2020 DEFINITION Xenopus laevis claudin 5 (transmembrane protein deleted in velocardiofacial syndrome) L homeolog (cldn5.L), mRNA. ACCESSION NM_001089976 NM_001089977 VERSION NM_001089976.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 2376) AUTHORS Zhao L, Wang P, Liu Y, Ma J and Xue Y. TITLE miR-34c regulates the permeability of blood-tumor barrier via MAZ-mediated expression changes of ZO-1, occludin, and claudin-5 JOURNAL J. Cell. Physiol. 230 (3), 716-731 (2015) PUBMED 25201524 REMARK GeneRIF: In conclusion, our present study indicated that miR-34c regulated the permeability of BTB via MAZ-mediated expression changes of ZO-1, occludin, and claudin-5. REFERENCE 2 (bases 1 to 2376) AUTHORS Yamagishi M, Ito Y, Ariizumi T, Komazaki S, Danno H, Michiue T and Asashima M. TITLE Claudin5 genes encoding tight junction proteins are required for Xenopus heart formation JOURNAL Dev. Growth Differ. 52 (7), 665-675 (2010) PUBMED 20887567 REMARK GeneRIF: The results of light- and electron-microscopic observations suggested that cldn5a and 5b are required for Xenopus heart tube formation through epithelialization of the precardiac mesoderm. REFERENCE 3 (bases 1 to 2376) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC060483.1. On Jul 25, 2007 this sequence version replaced NM_001089977.1. ##Evidence-Data-START## Transcript exon combination :: BC060483.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00012418, SAMD00012419 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2376 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="1L" gene 1..2376 /gene="cldn5.L" /gene_synonym="claudin-5; cldn5" /note="claudin 5 (transmembrane protein deleted in velocardiofacial syndrome) L homeolog" /db_xref="GeneID:398929" /db_xref="Xenbase:XB-GENE-6078354" exon 1..1664 /gene="cldn5.L" /gene_synonym="claudin-5; cldn5" /inference="alignment:Splign:2.0.8" misc_feature 76..78 /gene="cldn5.L" /gene_synonym="claudin-5; cldn5" /note="upstream in-frame stop codon" CDS 85..735 /gene="cldn5.L" /gene_synonym="claudin-5; cldn5" /codon_start=1 /product="claudin 5 (transmembrane protein deleted in velocardiofacial syndrome) L homeolog" /protein_id="NP_001083445.1" /db_xref="GeneID:398929" /db_xref="Xenbase:XB-GENE-6078354" /translation="
MASAAMEIIGLSLSILGWIGVILTCGLPMWQVSAFIENNIVVAQIIWEGLWMTCVVQSTGQMQCKVYDSILALHPELQAGRALTVLASIVGLVGLLVTIVGAKCTNCLQGSSVKSRVLLAGGIIYIVCGILLLVPLCWIANIVITEFYDPRVPASQKREMGAALYIGWGATSLLLLGGSLLCCSFAMKDGISNLPVKYSAPRIPTSNGDYDKKNYV"
misc_feature 103..594 /gene="cldn5.L" /gene_synonym="claudin-5; cldn5" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:304458" misc_feature 172..594 /gene="cldn5.L" /gene_synonym="claudin-5; cldn5" /note="PMP22_Claudin; Region: PMP-22/EMP/MP20/Claudin family" exon 1665..2364 /gene="cldn5.L" /gene_synonym="claudin-5; cldn5" /inference="alignment:Splign:2.0.8" ORIGIN
agcgcttggtatccagttggccatttggggcacagagtgagcggtgataactgtagagaagccctgctctcgaggtgactggaaatggcatccgccgcaatggagatcattggtctgtcgctgagcatcctgggctggataggggtgatcctgacctgcgggctcccaatgtggcaagtgtccgccttcatagaaaacaacatcgtggtggcgcagattatctgggaaggtctgtggatgacttgcgtggtgcaaagtacggggcagatgcagtgcaaagtctacgactccatcctcgcccttcacccggagctccaggctggcagagccctcactgtactggcctccattgtggggctcgtcgggctgctggtcaccatcgtgggcgccaagtgcaccaactgcctgcaagggagcagcgtgaagagccgggtgctgctcgccgggggcatcatctacattgtgtgcgggatcctgctgctcgtcccactctgctggatcgccaatatcgtcattaccgagttctacgaccctcgggtgccggcctcccaaaagagagagatgggggccgctttgtatataggctggggggccacttccctgctcctgcttgggggctccctcctgtgctgctcgttcgctatgaaagatggaatcagcaacctgcccgtcaagtactccgctccccgcatccccacctccaacggggattatgacaaaaagaactatgtgtagtcggtgaggggtcgcagggaacgcgtggtcctaactcagggctggactgtgacctgtacatacagtaatttggctcttccctcggtctgtgcgggctcagacacttaccgaccctgtgagcagctccaactgtcagctggtacccaggcaggtgtgatccatggacctggcagcgaccccgtccagttgggctcattacagatgaaaaaaaatctcatatctcgagggggtcggcaatacttaatggcacaagactttgggttatcttgggatcctatatccacgtacaatgtacatatacaaatagactgtgtatatttagctactttgtattttatcttctgcactgacaagggctcttctttccagctcctgggctgcaaggcagataatgccgccctccaactatcagggatccggcctccaactagggctgccagactgacccagcacagtcatatttcttattcctggtctttattctaggggaagagtaaggatacgtcattatgacaagaccagagagttcgctttgaacatgggcactgggcatatctcattttattgccatacacatattcgttttattctgttctattgtacgatgtatgtatttgggtggaatccaccaacacgtgtgttcaagcagataagcattgtgtgggagggtattcacttctaattcatgtacagattgtttaacttcttctgcagtgcacttagccagagagtaggctataaatgagatatataaccaaagtgcagacatttaaaatgtataatgtattttttaaatgtgtttaagaggcgggcacaatgtccatctctgcccattttggaaaggatttgggggtataaactatgtcaggaatttatttatgaaaatgcctttatatcatttcagtgctacagagccttgtagtgcattaccttaagcagtgtatctactatctacccagttagttctcctgttagaaaggttctttgcaaacagagtgatggggaatgcttatataagacagagcaaattgttgccttttcttgatactgcttcaaaggagagcatgactttgcacaagagcctttgttttagggtgctggccttccaaccctgtacccctcaatagcaggagtaatagtctccaatatcccaaaactgcacacataattcatcaccatagagtgactgatttcatagtagtggccatggataaaccagcttatggccaagtgggttagggaattcagaaaacacatatacatttcatcccagagtagaaaccctatgcagtcagtcagacttttacaaacggtagccccaaatgttatatcaccagtacttagctgcaggttagccatctgttaaactcactttgcacaaaatttggcagggatatatcccctatccctcctgacactgccatgaataactggatatatttctgtgttgaccattttttttacaatgcagggctggatttctttggtactgtttcaaaataaagtgctgcattatatgctttatttttgtatttgtcttccgttaatgttatattcaatcaagtcttcagttattatagtatatacataatgttgtttaaatctattaaatctctttatattatcaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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