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2020-03-31 05:05:56, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       NM_001088863             933 bp    mRNA    linear   VRT 28-OCT-2016
DEFINITION  Xenopus laevis claudin 6, gene 2 L homeolog (cldn6.2.L), mRNA.
ACCESSION   NM_001088863 NM_001088864
VERSION     NM_001088863.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 933)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
REFERENCE   2  (bases 1 to 933)
  AUTHORS   Fujita M, Itoh M, Shibata M, Taira S and Taira M.
  TITLE     Gene expression pattern analysis of the tight junction protein,
            Claudin, in the early morphogenesis of Xenopus embryos
  JOURNAL   Gene Expr. Patterns 2 (1-2), 23-26 (2002)
   PUBMED   12617832
REFERENCE   3  (bases 1 to 933)
  AUTHORS   Kollmar R, Nakamura SK, Kappler JA and Hudspeth AJ.
  TITLE     Expression and phylogeny of claudins in vertebrate primordia
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 98 (18), 10196-10201 (2001)
   PUBMED   11517306
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC068813.1.
            On Jul 25, 2007 this sequence version replaced NM_001088864.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC068813.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02851418, SAMN03700003
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="9_10L"
     gene            1..933
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="claudin 6, gene 2 L homeolog"
                     /db_xref="GeneID:398409"
                     /db_xref="Xenbase:XB-GENE-1009651"
     misc_feature    46..48
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="upstream in-frame stop codon"
     CDS             52..696
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="claudin4L1"
                     /codon_start=1
                     /product="claudin 6, gene 2 L homeolog"
                     /protein_id="NP_001082332.1"
                     /db_xref="GeneID:398409"
                     /db_xref="Xenbase:XB-GENE-1009651"
                     /translation="
MASTGLQVLGMAMSIIGWVGCIITCAMPMWRVTAFIGNNIVVAQIIWEGLWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALTVICILVALLAMLVGIVGAKCTNCIEDENTKAKVSMVSGVVFLVAGILMLIPVCWSANSIIRDFYNPLVVEAQKRELGAAIYIGWASSALMLLGGGLLCCSCPKKNDAPYSARYTAPSGPARSDYPSKNYV"
     misc_feature    61..567
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:304458"
ORIGIN      
gctggacattgctgcagatctctccaccttgaccactctccactgtaaaagatggcttctactggtctccaagtccttggcatggcaatgtccatcattggctgggtgggatgtataatcacctgtgccatgcccatgtggagggtgactgccttcattgggaacaacatagtggtggcacagatcatctgggaaggactgtggatgaattgcgttgtgcagagtactggacagatgcagtgcaaggtctacgactccatgttggctcttcctcaggatttgcaggctgcccgtgcccttactgtcatctgtatactggtagccctgctggccatgcttgttggtattgtgggagccaagtgcaccaactgcatagaagatgagaacaccaaggccaaagtcagcatggtatcgggtgtggtcttcctggtggctggtatcctcatgctcatccctgtctgctggtctgcaaacagcatcatccgtgacttctacaatcccctggtggtggaggctcagaagagagaactgggagctgccatatacatagggtgggcttcctctgctctgatgctcctgggtggaggcctcctgtgctgctcttgccccaagaagaacgacgctccctactctgcaagatacactgccccttcaggcccagcacggagtgactaccccagcaagaactatgtctaagggcataactagctggcttggacaattgcattcactctttatatacagtatgggacatatttatccgttccttcagcagatgtctggactgcatgtattgtgtgtttgttggggggggggcgcatttgtggagacttgtctgtttcttggatttttttttagctgcctcagaccttttttatatataactttgtaaacttttaaataaaactttctccattaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]