2024-03-29 19:27:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001085741 996 bp mRNA linear VRT 22-MAY-2022 DEFINITION Xenopus laevis developing brain homeobox 1 S homeolog (dbx1.S), mRNA. ACCESSION NM_001085741 VERSION NM_001085741.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 996) AUTHORS Gershon AA, Rudnick J, Kalam L and Zimmerman K. TITLE The homeodomain-containing gene Xdbx inhibits neuronal differentiation in the developing embryo JOURNAL Development 127 (13), 2945-2954 (2000) PUBMED 10851138 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF253504.1. ##Evidence-Data-START## Transcript exon combination :: AF253504.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00012419, SAMN04111048 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..996 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="4S" /map="4S" gene 1..996 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /note="developing brain homeobox 1 S homeolog" /db_xref="GeneID:373822" /db_xref="Xenbase:XB-GENE-865351" CDS 1..996 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /note="homeodomain protein dbx; developing brain homeobox protein 1" /codon_start=1 /product="homeobox protein DBX1" /protein_id="NP_001079210.1" /db_xref="GeneID:373822" /db_xref="Xenbase:XB-GENE-865351" /translation="
MMFPSLLAPPAVYPNLLRPTPTLTLPQSIQTALSNHTSFLIEDLIRISRPAGFLPRAVPPPSMSPPTSESPNCMSETSDLARREGPNQTSISSNNSSPFLKFGVNAILSSSPRTESAQVLLPSAHPKPFTFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLVARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAGKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKFNPHPDLSDVSKKSSGEGEEEPLCPGNSPAHALPYQCPEHHLRLDTQLPSSPFNSSSASKPSDFSDSEEEGGEQEEEITVS"
misc_feature 166..282 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /note="propagated from UniProtKB/Swiss-Prot (Q9I9H2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(526..534,538..540,589..591,607..609,646..648, 652..657,664..669,673..681,685..690) /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 526..687 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(526..528,535..537,655..657,664..669,676..678) /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 694..993 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /note="propagated from UniProtKB/Swiss-Prot (Q9I9H2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 1..343 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /inference="alignment:Splign:2.1.0" exon 344..445 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /inference="alignment:Splign:2.1.0" exon 446..648 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /inference="alignment:Splign:2.1.0" exon 649..996 /gene="dbx1.S" /gene_synonym="dbx; dbx-A; dbx1; Xdbx" /inference="alignment:Splign:2.1.0" ORIGIN
atgatgttcccaagcctcttagctccccctgcggtgtaccccaatctactgagacccaccccgactctgacgctgccacagtctatccagactgccctgtccaaccacaccagctttttaatagaagacttgatcaggatcagccgaccagcaggattcctgcccagggctgtcccacctcccagcatgtcccctccaacctctgaaagtcccaactgcatgagcgagacatcagacttggcaagaagagagggtccaaaccagacttcaatttcttccaacaacagttccccttttctgaagtttggagtcaatgcaatcctctcctccagccctaggacagagtcggcacaagtcttgctccccagcgcccatccaaagcccttcaccttcccttactttgaaggatccttccagcctttcattagatcttcctatttcccagcttcctcttcggtggtgcccatccccggcacattctcctggcccctggtcgctcgagggaagccccgccggggcatgttgcgcagagccgtgttctcagatgtccaacgcaaagctctagagaagatgttccagaagcagaaatatatcagcaaaccggacagaaagaaactggctgggaagctggggctcaaagactctcaggtaaaaatttggttccagaatcggcgaatgaagtggcgaaactccaaggaacgggaattgctgtcctccggagggtgcagggagcagacactacccaccaaatttaacccccacccagacctcagtgacgtgagcaagaaatcctcgggggagggagaggaggagccattgtgcccaggaaacagccccgcccacgccttgccttatcaatgcccagagcaccatttaagacttgatacccagcttccttcctccccttttaactccagcagtgccagtaaaccctcagacttctcagactcagaggaagagggaggggaacaggaagaagagatcacagtctcctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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