GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 19:27:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001085741             996 bp    mRNA    linear   VRT 22-MAY-2022
DEFINITION  Xenopus laevis developing brain homeobox 1 S homeolog (dbx1.S),
            mRNA.
ACCESSION   NM_001085741
VERSION     NM_001085741.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Gershon AA, Rudnick J, Kalam L and Zimmerman K.
  TITLE     The homeodomain-containing gene Xdbx inhibits neuronal
            differentiation in the developing embryo
  JOURNAL   Development 127 (13), 2945-2954 (2000)
   PUBMED   10851138
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF253504.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF253504.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00012419, SAMN04111048
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="4S"
                     /map="4S"
     gene            1..996
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /note="developing brain homeobox 1 S homeolog"
                     /db_xref="GeneID:373822"
                     /db_xref="Xenbase:XB-GENE-865351"
     CDS             1..996
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /note="homeodomain protein dbx; developing brain homeobox
                     protein 1"
                     /codon_start=1
                     /product="homeobox protein DBX1"
                     /protein_id="NP_001079210.1"
                     /db_xref="GeneID:373822"
                     /db_xref="Xenbase:XB-GENE-865351"
                     /translation="
MMFPSLLAPPAVYPNLLRPTPTLTLPQSIQTALSNHTSFLIEDLIRISRPAGFLPRAVPPPSMSPPTSESPNCMSETSDLARREGPNQTSISSNNSSPFLKFGVNAILSSSPRTESAQVLLPSAHPKPFTFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLVARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAGKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKFNPHPDLSDVSKKSSGEGEEEPLCPGNSPAHALPYQCPEHHLRLDTQLPSSPFNSSSASKPSDFSDSEEEGGEQEEEITVS"
     misc_feature    166..282
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9I9H2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(526..534,538..540,589..591,607..609,646..648,
                     652..657,664..669,673..681,685..690)
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    526..687
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(526..528,535..537,655..657,664..669,676..678)
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    694..993
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9I9H2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            1..343
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /inference="alignment:Splign:2.1.0"
     exon            344..445
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /inference="alignment:Splign:2.1.0"
     exon            446..648
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /inference="alignment:Splign:2.1.0"
     exon            649..996
                     /gene="dbx1.S"
                     /gene_synonym="dbx; dbx-A; dbx1; Xdbx"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atgatgttcccaagcctcttagctccccctgcggtgtaccccaatctactgagacccaccccgactctgacgctgccacagtctatccagactgccctgtccaaccacaccagctttttaatagaagacttgatcaggatcagccgaccagcaggattcctgcccagggctgtcccacctcccagcatgtcccctccaacctctgaaagtcccaactgcatgagcgagacatcagacttggcaagaagagagggtccaaaccagacttcaatttcttccaacaacagttccccttttctgaagtttggagtcaatgcaatcctctcctccagccctaggacagagtcggcacaagtcttgctccccagcgcccatccaaagcccttcaccttcccttactttgaaggatccttccagcctttcattagatcttcctatttcccagcttcctcttcggtggtgcccatccccggcacattctcctggcccctggtcgctcgagggaagccccgccggggcatgttgcgcagagccgtgttctcagatgtccaacgcaaagctctagagaagatgttccagaagcagaaatatatcagcaaaccggacagaaagaaactggctgggaagctggggctcaaagactctcaggtaaaaatttggttccagaatcggcgaatgaagtggcgaaactccaaggaacgggaattgctgtcctccggagggtgcagggagcagacactacccaccaaatttaacccccacccagacctcagtgacgtgagcaagaaatcctcgggggagggagaggaggagccattgtgcccaggaaacagccccgcccacgccttgccttatcaatgcccagagcaccatttaagacttgatacccagcttccttcctccccttttaactccagcagtgccagtaaaccctcagacttctcagactcagaggaagagggaggggaacaggaagaagagatcacagtctcctaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]