2024-09-08 09:52:11, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001076123 3522 bp mRNA linear MAM 03-APR-2024 DEFINITION Bos taurus claudin 12 (CLDN12), mRNA. ACCESSION NM_001076123 XM_582151 VERSION NM_001076123.2 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 3522) AUTHORS Zimin,A.V., Delcher,A.L., Florea,L., Kelley,D.R., Schatz,M.C., Puiu,D., Hanrahan,F., Pertea,G., Van Tassell,C.P., Sonstegard,T.S., Marcais,G., Roberts,M., Subramanian,P., Yorke,J.A. and Salzberg,S.L. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol 10 (4), R42 (2009) PUBMED 19393038 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from NKLS02000002.1. On Feb 8, 2024 this sequence version replaced NM_001076123.1. ##Evidence-Data-START## Transcript exon combination :: BC122589.1, SRR5571263.28235.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA6648753, SAMEA6648754 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-90 NKLS02000002.1 121402061-121402150 91-178 NKLS02000002.1 121403604-121403691 179-3522 NKLS02000002.1 121413050-121416393 FEATURES Location/Qualifiers source 1..3522 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="2" /map="2" /breed="Hereford" gene 1..3522 /gene="CLDN12" /gene_synonym="claudin-12" /note="claudin 12" /db_xref="BGD:BT12778" /db_xref="GeneID:538709" /db_xref="VGNC:VGNC:27404" exon 1..90 /gene="CLDN12" /gene_synonym="claudin-12" /inference="alignment:Splign:2.1.0" exon 91..178 /gene="CLDN12" /gene_synonym="claudin-12" /inference="alignment:Splign:2.1.0" misc_feature 144..146 /gene="CLDN12" /gene_synonym="claudin-12" /note="upstream in-frame stop codon" exon 179..3522 /gene="CLDN12" /gene_synonym="claudin-12" /inference="alignment:Splign:2.1.0" CDS 216..950 /gene="CLDN12" /gene_synonym="claudin-12" /codon_start=1 /product="claudin-12" /protein_id="NP_001069591.1" /db_xref="BGD:BT12778" /db_xref="GeneID:538709" /db_xref="VGNC:VGNC:27404" /translation="
MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTVYTGLWVKCARYDGGNDCLMYDAAWYSSVDQLDLRVLQFALPLSILIAMGALLLCLIGMCNTAFRSSVPNIKLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWVIFYNIHLNRKFEPVFAFDYAVYVTVASAGGLFMTALLLFIWYCACKSLPSPFWQPLYSHPPGMHTYSQPYSARSRLSAIEIDIPVVSHTT"
misc_feature 246..308 /gene="CLDN12" /gene_synonym="claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q0IIL2.1); transmembrane region" misc_feature 477..539 /gene="CLDN12" /gene_synonym="claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q0IIL2.1); transmembrane region" misc_feature 621..683 /gene="CLDN12" /gene_synonym="claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q0IIL2.1); transmembrane region" misc_feature 738..800 /gene="CLDN12" /gene_synonym="claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q0IIL2.1); transmembrane region" misc_feature 897..899 /gene="CLDN12" /gene_synonym="claudin-12" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P56749; propagated from UniProtKB/Swiss-Prot (Q0IIL2.1); phosphorylation site" misc_feature 906..908 /gene="CLDN12" /gene_synonym="claudin-12" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P56749; propagated from UniProtKB/Swiss-Prot (Q0IIL2.1); phosphorylation site" ORIGIN
gggaacgcacttcctgggacgccgagaggaagacgctccgagaggctcctcagtgtgggcgagtgaaaatgccctggatgtgagaaacaggtccaggccatcttgactgtgttcagatgtgcatacatttcttctaagttgattaaagttgttttggaactatcaagtacctcaaagatctgactggcagtactgcacacacctgcctgcctgccatgggctgtcgggatgtccacgcggccaccgtgctgtccttcctgtgtggaatcgcctccgtagcgggcctctttgcaggcacactgcttcccaactggaggaagttacgactgatcacgttcaacagaaacgagaagaacctgaccgtctacacaggcctgtgggtgaagtgcgcccgctatgacgggggcaatgactgcctgatgtacgacgctgcctggtactcctctgtggaccagctggacctgcgggtcctccagtttgccctgccactcagcatcctgatcgcgatgggcgccctgctgctctgcctgatcggaatgtgtaacacggccttcaggtcctccgtgcccaacatcaagctggctaagtgcctggtcaatagtgcgggctgccatctggtggccgggctgctgtttttcctggcgggtactgtgagcctctccccgtccatctgggtcatcttttacaacatccacctgaacaggaagttcgagccagtctttgcgtttgactatgctgtgtacgtcactgtggctagtgctgggggcttgtttatgacggccctgctactatttatttggtactgtgcatgcaagtccttgccctctcctttctggcagccgctgtactcccaccctcccggtatgcacacgtactcacagccctattcagcccgttcccgcctctctgccattgaaatcgacattccagtagtttcccacaccacctaatggggaagtcgttgttcaagaaaccttctagcctcacatttccctcgtgaagaagccgttttggacctatatccattttcctcggttcctgatcagtcagtgaagccaaatctgtatgtcttggtaggatgaagtgctgctagtttttatgaaaagtacaatattttaaatgtgaatcattccttttatcttgcttcttgtgctcaaagcatttttaacctccatattgatatctgatcagttatttaggtagaaaggacctgtgtctcaattgaggtgatttagagccacatggtaaaaaatggttattaagaggagctgttatatgcgatccttagaaatatttcagaatgtcagaatgtgtatcgccctttttctataataccttaaattggtgggaaaaaatggacaatttcaaattaagatttttttttttcaggtaagggtaatagtttatcagtagccagtctaccagcttaggctgtaacttttcttacttctttctcggggctagttgtattgaatagagtttggtattttgaagatgactttcttttgtgagttcttatcttctacctcatgcctatgtttaaaaataaaatgtatcttaagtgatgtcagaataagcctaacgtttaaaatatctattagtatggataacgtttaacctaattataaaagttaatggttctataagttgtattattagagttaaactgtgccatgtgatgggttggtgcttcctttgaggcaaaaaaaaaacacctatttttttccagatatcatcaaccaggtggcactcaggcccacatgtaatctcttagtgaccaagagaaagaaagaggcccgagtggttagttcttcaaatagtggcaggggacaagcatctgctcttcggtgacagctgcagaggatcatcggggtgactgccttttgggtgatgggtggagtgaggcatggcctccccatgaccaggttccctcttgattcagttcccgccccatcaccgactatttctgtgagtgtatatctttgcccagcacgttactaggtgcagttgagaatacatggaaagtatgagatctcgtcccatctactaagaaattttacttcaagatagaagatcatacagttaatgacctcagtggcagctgatcttcactcagtcattgtgcctggagtacatttcacccaaagcatggctttctggcagccaggcttattgtaaataccagcaatatttggatccagaaactcagtttgttggatcctgtagagcacctaccttagtcttgatgctgtgataacagggtatcagattcatgagaactggatgggccacagtggtaaaaaacaaacaaaacaaaacccaccaattgttcccttttcacctctaaaaatatgatggcatatcaaagagggagaagtatttaaatctctcttctaatgagataatgcttagaggaaaccatgttaacaccgagatgaatgcttacagattcagggatattgggtctttacccttcggaatttgagctgcgtacttatttgatgtcatttgctccacatcagtgctgtgttcatgcggaatttgttctattacccgttacaaatctcacgtacaactagttgcatgattgacacgttattgtgcctcttttgcaaatctgagtatgcttctggaacttctgtgcataagcagtactttcgtttctaattccaaacactggtttatgtaaatagcaagtacatccagttgtataatttttaaatgccttcagttgaaagcatgcaaaactctggtttttaagcaatagcttctgatttccttcagttctttttactcttcttggatgtagctgagttttgatcactccaagacaacagcaggtaaaattttaagattaatattaattttccttttactaattaatttctgttcccattttcactcactttgtccagaagtgtcaagaattccaccattctttgtataagtaatgttaaaagcagaccaagccattaatattctagacagtttttagtccatgggaccaatatatataaatacatataaaatgttgaacttttactacaagcattttttggattcttttcataaactatagcctcaaattagtgtttattatggattcacatggcaatagaaacaggtgtttcccttattgtcattaatatttcagatttgctgtcagaaactattcttattcttcaaagccatcaaaggaatccatatatttataattttttaaataacttttgagcattcatcaggctatcattgtgatgggtgatatctttcttttgttgttgcaagtctcttcatgttaaaggccttttacagaagcttgggaaacagtttggaagaccttaaatgtagtctaatggaccggctttggtttatccaaccacgggaggaaaaaacgcctgagtttacttgtaaataagtatacactataatagataatatgtttgctgtaaactgcagtgtaaaacttcgataaaactgcactgtacttcttgatgtttattaaaagatgtatttttacaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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