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2021-10-17 15:04:00, GGRNA.v2 : RefSeq release 207 (Jul, 2021)

LOCUS       NM_001033894            2410 bp    mRNA    linear   ROD 20-JUN-2021
DEFINITION  Rattus norvegicus janus kinase and microtubule interacting protein
            1 (Jakmip1), mRNA.
ACCESSION   NM_001033894 XM_223515
VERSION     NM_001033894.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Berg JM, Lee C, Chen L, Galvan L, Cepeda C, Chen JY, Penagarikano
            O, Stein JL, Li A, Oguro-Ando A, Miller JA, Vashisht AA, Starks ME,
            Kite EP, Tam E, Gdalyahu A, Al-Sharif NB, Burkett ZD, White SA,
            Fears SC, Levine MS, Wohlschlegel JA and Geschwind DH.
  TITLE     JAKMIP1, a Novel Regulator of Neuronal Translation, Modulates
            Synaptic Function and Autistic-like Behaviors in Mouse
  JOURNAL   Neuron 88 (6), 1173-1191 (2015)
   PUBMED   26627310
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Vidal RL, Fuentes P, Valenzuela JI, Alvarado-Diaz CP, Ramirez OA,
            Kukuljan M and Couve A.
  TITLE     RNA interference of Marlin-1/Jakmip1 results in abnormal
            morphogenesis and migration of cortical pyramidal neurons
  JOURNAL   Mol Cell Neurosci 51 (1-2), 1-11 (2012)
   PUBMED   22828129
  REMARK    GeneRIF: RNA interference of Marlin-1 in vivo results in abnormal
            migration and abnormal morphology of newborn pyramidal neurons
            during the formation of the cortex.
REFERENCE   3  (bases 1 to 2410)
  AUTHORS   Vidal RL, Valenzuela JI, Lujan R and Couve A.
  TITLE     Cellular and subcellular localization of Marlin-1 in the brain
  JOURNAL   BMC Neurosci 10, 37 (2009)
   PUBMED   19386132
  REMARK    GeneRIF: Marlin-1 is enriched in restricted areas of the brain
            including olfactory bulb, cerebral cortex, hippocampus and
            cerebellum; it is abundant in dendrites and axons of hippocampal
            neurons, associated with microtubules at the ultrastructural level.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2410)
  AUTHORS   Vidal RL, Ramirez A, Castro M, Concha II and Couve A.
  TITLE     Marlin-1 is expressed in testis and associates to the cytoskeleton
            and GABAB receptors
  JOURNAL   J Cell Biochem 103 (3), 886-895 (2008)
   PUBMED   17668444
  REMARK    GeneRIF: Our findings demonstrate that Marlin-1 associates with a
            microtubule fraction and with GABA(B) receptors in testis
            suggesting that the set of protein interactions of Marlin-1 are
            conserved in different tissues.
REFERENCE   5  (bases 1 to 2410)
  AUTHORS   Nishimura Y, Martin CL, Vazquez-Lopez A, Spence SJ,
            Alvarez-Retuerto AI, Sigman M, Steindler C, Pellegrini S, Schanen
            NC, Warren ST and Geschwind DH.
  TITLE     Genome-wide expression profiling of lymphoblastoid cell lines
            distinguishes different forms of autism and reveals shared pathways
  JOURNAL   Hum Mol Genet 16 (14), 1682-1698 (2007)
   PUBMED   17519220
REFERENCE   6  (bases 1 to 2410)
  AUTHORS   Vidal RL, Ramirez OA, Sandoval L, Koenig-Robert R, Hartel S and
            Couve A.
  TITLE     Marlin-1 and conventional kinesin link GABAB receptors to the
            cytoskeleton and regulate receptor transport
  JOURNAL   Mol Cell Neurosci 35 (3), 501-512 (2007)
   PUBMED   17532644
REFERENCE   7  (bases 1 to 2410)
  AUTHORS   Couve A, Restituito S, Brandon JM, Charles KJ, Bawagan H, Freeman
            KB, Pangalos MN, Calver AR and Moss SJ.
  TITLE     Marlin-1, a novel RNA-binding protein associates with GABA
            receptors
  JOURNAL   J Biol Chem 279 (14), 13934-13943 (2004)
   PUBMED   14718537
  REMARK    GeneRIF: Marlin-1 functions to regulate the cellular levels of
            GABA(B) R2 subunits, which may have significant effects on the
            production of functional GABA(B) receptor heterodimers.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC104677.1.
            On Sep 30, 2005 this sequence version replaced XM_223515.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC104677.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..2410
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="janus kinase and microtubule interacting protein 1"
                     /db_xref="GeneID:305434"
                     /db_xref="RGD:1562401"
     exon            1..69
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            70..332
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    165..167
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="upstream in-frame stop codon"
     CDS             204..2084
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="multiple alpha helices and RNA-linker protein 1;
                     multiple coiled-coil GABABR1-binding protein"
                     /codon_start=1
                     /product="janus kinase and microtubule-interacting protein
                     1"
                     /protein_id="NP_001029066.1"
                     /db_xref="GeneID:305434"
                     /db_xref="RGD:1562401"
                     /translation="
MSKKGRSKGEKPETETDSVQMANEELRAKLTNIQIEFQQEKSKVGKLRERLQEAKLEREQEQRRHTAYISELKAKLHEEKTKELQALREALIRQHEQEAARTAKIKEGELQRLQATLNVLRDGAADKVKTALLADAREEARRTFDGERQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEIKGKERVILALEKELGVQAGQTQRLLLQKEALDEQLVQVKEAERHHSSPKRELPPGIGDMAELMGGQDQHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNELLKRSRETEVQLKPLVEKNKRMNKKNEDLLHSIQRMEEKLKSLTRENVEMKEKLSAQASLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLLRSKRHRGKSLKPPKKHVVETFFGFDEESVDSETLSETSYNTDRTDRTPATPEEDLDETTTREEADLRFCQLTREYQALQRAYALLQEQVGGTLDAEREARTREQLQADLLRCQAKIEDLEKLLVEKGQDAAWVEEKQVLMRTNQDLLEKIYRLEMEENQLKSEMQDAKDQNELLEFRVLELEVRDSICCKLSNGADILFEPKLKFV"
     misc_feature    204..1298
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q3SWS9.1);
                     Region: Mediates association with microtubules.
                     /evidence=ECO:0000250"
     misc_feature    204..278
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q3SWS9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    <219..1292
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="chromosome segregation protein SMC, primarily
                     archaeal type; Region: SMC_prok_A; TIGR02169"
                     /db_xref="CDD:274009"
     misc_feature    1296..2081
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q3SWS9.1);
                     Region: Mediates interaction with TYK2 and GABBR1.
                     /evidence=ECO:0000250"
     misc_feature    1347..1349
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="Phosphoserine.
                     /evidence=ECO:0000250|UniProtKB:Q96N16; propagated from
                     UniProtKB/Swiss-Prot (Q3SWS9.1); phosphorylation site"
     misc_feature    1449..2015
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="JAKMIP CC3 domain; Region: JAKMIP_CC3; pfam16034"
                     /db_xref="CDD:406442"
     misc_feature    1557..1646
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q3SWS9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1611..1613
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /note="Phosphothreonine.
                     /evidence=ECO:0000250|UniProtKB:Q96N16; propagated from
                     UniProtKB/Swiss-Prot (Q3SWS9.1); phosphorylation site"
     exon            333..827
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            828..1037
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1157
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1158..1304
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1445
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1505
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1634
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..1763
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1764..1847
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1848..1910
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..2319
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /inference="alignment:Splign:2.1.0"
     STS             2031..2222
                     /gene="Jakmip1"
                     /gene_synonym="Marlin-1; Marlin1"
                     /standard_name="AI058742"
                     /db_xref="UniSTS:243964"
ORIGIN      
cagccatcctgcagggcagatggagggactcccagacgaggctggaattggttcggggaggtggtagagactctccagtgatggtgtgcacagaggacgagcggaggcctgcacgactgcttagcacagctgagctggtagctgtgcttgccggtgggcaggcgtgaacctcaggacctcagcgtctcactccaagaggaaacatgtctaaaaagggccgcagcaagggtgagaagcccgagacagagacagactctgtacagatggccaatgaagagctacgggccaagctgacgaacatccagatcgagttccagcaggagaagagcaaggtggggaagctgcgggagcgtctgcaggaggccaagctggaacgggagcaggagcagcgtcgccacacggcctacatctcagaactcaaggccaagctgcacgaagagaagacgaaggaactgcaggcgctgcgcgaggcgctcatccggcagcacgagcaggaggcagcgcggaccgccaagatcaaggaaggcgagctgcagcgactgcaggccacgctgaatgtgctgcgcgatggcgccgcggacaaagtcaagactgcattgctggccgacgcgcgcgaggaggcgcgcaggacctttgatggcgagcgccagaggctgcagcaggagattctggaactgaaggctgcgcgcaaacaggcagaagaggcactcagcaactgcatgcaggcagacaaggccaaagccgcggacctgcgcgctgcgtaccaggcgcaccaggatgaggtgcaccgcatcaagcgggagtgtgaacgtgacatccgcagactgatggacgagatcaaaggaaaggaacgcgtgatcctggccctggagaaggagcttggtgtgcaggccgggcagacccagcggctgctattacagaaggaggctctggatgagcagctggtccaggtcaaggaggccgaacgccaccacagcagcccaaagagggagcttcctccaggcattggtgacatggctgagcttatgggtggccaggatcagcatatggacgagcgagatgtgaggcgatttcagctgaagattgccgaactgaattcagtgattcggaagctggaggacaggaacaccctgctggctgatgagaggaacgaactgctgaagcgctctcgggagacggaggtgcagctgaagccgctggtggagaagaacaaacgcatgaataaaaagaacgaggatctgctgcacagcatccaaaggatggaggagaaactcaagagcctcacgagggaaaacgtggagatgaaagaaaagctgtctgcccaggcctcactaaagcgacacacatccctgaatgacctcagtctgaccagggacgagcaggagatagagttcctgaggctgcaggtgctggaacagcagcatgtcattgatgacctctctctggaaagagaacgcctgctgcgctccaagaggcatcgagggaagagcctgaaaccccccaagaagcatgttgtggagacattttttggatttgatgaggagtctgtggactctgaaacattgtcagagacgtcctacaacacagacaggacagaccggaccccagccacgcctgaagaggacttagatgagaccacaaccagagaagaggctgacctgaggttctgccagctgaccagggagtaccaggctctgcagagggcttatgccctgcttcaggagcaggttggggggacgctggatgctgagagggaggctcggactcgggagcaacttcaggctgacctgctgagatgccaggccaaaattgaggacttagagaagctgctggttgagaagggacaggatgctgcgtgggtagaggagaagcaggtactcatgaggacaaaccaggacctgctggagaagatttacaggctggagatggaggagaaccagctaaagagtgaaatgcaagacgccaaggaccagaacgagctgttagaattcagagtgctagaactcgaagtaagagactctatctgttgtaagctctcaaatggagcagacattctctttgagcccaaactgaaattcgtgtaaagctctctgctatttccaagcatgcgtgaagggacgcgcgttaccgtttctctccttccttcctccgttcttttcctcttcgtctttttaaaaagatctgtatgttcggggtaacttcactgccttaacatgtcctggggaggatgctcgcgacgcctgtggacctgtaccagagcaatcgacttattgcctaccgcttgttttgcacttaataaaataagttgtttttgcaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]