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2020-03-31 04:54:00, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       NM_001030395            1854 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis distal-less homeobox 3 (dlx3), mRNA.
ACCESSION   NM_001030395
VERSION     NM_001030395.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC090605.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC090605.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028296, SAMN00861986
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="10"
                     /map="10"
     gene            1..1854
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="distal-less homeobox 3"
                     /db_xref="GeneID:594954"
                     /db_xref="Xenbase:XB-GENE-5879293"
     misc_feature    4..6
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="upstream in-frame stop codon"
     CDS             46..876
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="distal-less homeo box 3"
                     /codon_start=1
                     /product="homeobox protein DLX-3"
                     /protein_id="NP_001025566.1"
                     /db_xref="GeneID:594954"
                     /db_xref="Xenbase:XB-GENE-5879293"
                     /translation="
MSGSYEKKMAVLTDLTTSCHPVTKDSPTLPESTATDMGYYSGHLSGGQHDFFQTQAYSPSISSYGYHHPHHQYNFNGLVGNESFLPKDDYQYGGGYRAFGHYREPPVPETVSVKEEPETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKTGEGPGLEHSPNNSDSMACNSPSSPPVWDNSRSRTPQQQQQQSLPPCSSPSYMENYHPWYTQQTQPGQHLQPSEVMHQPPSNTVY"
     misc_feature    115..351
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="Homeobox protein distal-less-like N terminal;
                     Region: DLL_N; pfam12413"
                     /db_xref="CDD:315147"
     misc_feature    370..726
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="Homeobox protein; Region: Abdominal-A; cl27820"
                     /db_xref="CDD:332641"
     misc_feature    order(439..453,457..459,508..510,526..528,565..567,
                     571..576,583..588,592..600,604..609)
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    445..606
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:306543"
     misc_feature    order(445..447,454..456,574..576,583..588,595..597)
                     /gene="dlx3"
                     /gene_synonym="ai4; dlx3-a; dlx3-b; tdo; Xdll-2; xdlx3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
gtctgattaatttccagggagctctcttctccggctctacaaaccatgagcgggtcctatgaaaagaagatggcagtgttgaccgacctgaccacttcttgtcatcctgtgaccaaggactctcccaccctgccagagtcaaccgccacggatatgggctattatagcggtcacctctctggtgggcagcacgacttcttccagactcaagcgtactccccatctatcagcagctatggctaccaccacccccaccatcagtacaactttaatgggctagtagggaacgagagctttctgcccaaggatgactatcagtatggagggggatatcgggcgtttgggcattacagagagcctccagtgccggagacagtttcagtgaaggaagagccagaaaccgaagttcggatggttaatgggaaacctaaaaagatccgaaagccaagaaccatctattctagttaccagctggctgcattgcagagaaggttccagaaggcccaatatttggcactgcccgagagagcagaactagccgcccagttagggctcactcaaacgcaggtaaaaatttggttccagaaccgaagatctaagtttaaaaaactgtacaaaaccggagaagggcctggtttggaacacagtccgaataacagcgactccatggcttgcaattccccttcatccccacccgtatgggacaatagtcgaagccgaacccctcagcagcagcagcagcaaagtcttccaccgtgctcttcaccctcttatatggagaactaccatccgtggtacacccagcaaacccaacctggccagcacctacaaccatctgaagttatgcatcaacctccttccaatacagtgtattaagtgaaaaaagacactggcactaatttatctttgtgccctcctgtattttatttttattttttttggaatttgatgacagtcaaaaagtttgaaaaacaatgtcagctcaaggtcaaaccgataattaggtgcattttatacacagcacctaaagaattgcttgatccctcaggctgagtggtttggatggacaatattttggagattatccattattttggatgccactatacgtcagtctttctcgaaccttggattctcgaaccttgtgttgggcctcttaatttatcattaatgaaagtgacattaatgtaatgttctaaagtatagattctcattcttttatgcctctcctgacaaccatggtttaaatactgcaatagctgaattaaaactctaaaggtgttatttttaagaccctttcctggacttgttgctgtttgaccaatgtgatattctgtgccttagtaaatgaagctatatttaaataatagatccatttttacgttttataagggacaagaagcaaaatattccataactctactgaatcgagatacaaagacttgtagagttgattctgcctgggactgtaagatgtggctgcatctcagtggcctcaccagcttccataaaggaacatcgaatggtcaaagggtcccgaattcagtgtcactccatggtggaacggacttctttccagagctgctgtttgtgtaacttggtcacgttcctgtgtcatggaaatatttaaaacaaaaacaaaacaaaaaaaagactatggttggccttaacttatttttgtaatatttttggggggttgtgtttggaatgggaggagaagatgatgagaactaactttgattagaagatgggggggggggggggtgttaaagaatgttatggtgtgaatgcaaataaatttttatggtattttgctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]