2024-04-25 19:54:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001017168 1216 bp mRNA linear VRT 22-DEC-2019 DEFINITION Xenopus tropicalis GS homeobox 2 (gsx2), mRNA. ACCESSION NM_001017168 VERSION NM_001017168.2 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE 1 (bases 1 to 1216) AUTHORS Illes JC, Winterbottom E and Isaacs HV. TITLE Cloning and expression analysis of the anterior parahox genes, Gsh1 and Gsh2 from Xenopus tropicalis JOURNAL Dev. Dyn. 238 (1), 194-203 (2009) PUBMED 19097192 REMARK GeneRIF: Results show that Gsh1 and Gsh2 exhibit complex, overlapping patterns of expression within the anterior nervous system from open neural plate stages. REFERENCE 2 (bases 1 to 1216) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev. Dyn. 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CR855836.2. On Oct 14, 2005 this sequence version replaced NM_001017168.1. ##Evidence-Data-START## Transcript exon combination :: CR855836.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028291, SAMD00028292 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1216 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="1" /map="1" gene 1..1216 /gene="gsx2" /gene_synonym="gsh2" /note="GS homeobox 2" /db_xref="GeneID:549922" /db_xref="Xenbase:XB-GENE-492505" misc_feature 37..39 /gene="gsx2" /gene_synonym="gsh2" /note="upstream in-frame stop codon" CDS 49..795 /gene="gsx2" /gene_synonym="gsh2" /note="genomic screened homeo box 2; genomic-screened homeobox 2" /codon_start=1 /product="GS homeobox 2" /protein_id="NP_001017168.1" /db_xref="GeneID:549922" /db_xref="Xenbase:XB-GENE-492505" /translation="
MSRSFYVDSLIIKDSSSRPIPALPDLSHHHHHHHGQDFLLPISMPSPTVMSVHAPVCPSRKSGSFCVCPICVASHLHSSRNSIPLLKGHFPNGEAQYCQRVSQQPSPAMVHPAHSPVCSPTYNVTDPRRFHCMTMGGAENSQAQNGKRMRTAFSSTQLLELEREFSSNMYLSRLRRIEIATYLSLSEKQVKIWFQNRRVKHKKENKGSQRNTHGGCKCTGPQGHYPRSEDEDSLSTASTSEDKEVSPL"
misc_feature order(487..501,505..507,556..558,574..576,613..615, 619..624,631..636,640..648,652..657) /gene="gsx2" /gene_synonym="gsh2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(493..495,502..504,622..624,631..636,643..645) /gene="gsx2" /gene_synonym="gsh2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 496..654 /gene="gsx2" /gene_synonym="gsh2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" regulatory 1140..1145 /regulatory_class="polyA_signal_sequence" /gene="gsx2" /gene_synonym="gsh2" polyA_site 1158 /gene="gsx2" /gene_synonym="gsh2" ORIGIN
ctgtcactgagagaggagaaggagctgtctgactgctgagctgcggcaatgtctaggtctttttatgttgactctctaattatcaaagattcctcctcaagaccaattccagccttgcctgatctctcccaccaccatcatcatcatcatgggcaggatttccttctgcctatcagcatgccatctccaacagtcatgtcggtgcatgcccctgtgtgcccttctaggaaaagtggcagcttttgtgtgtgtcccatctgtgtggcatctcacctgcactccagccggaatagcatccctctgctcaagggccacttccctaatggggaggcgcagtactgccagagggtgagccaacagcccagcccagccatggtccacccagcgcattcacctgtctgcagcccaacctacaacgttacggaccccaggagattccattgcatgacaatgggtggagcagagaacagccaagcgcagaatggcaagcgaatgaggactgcatttagcagcacccagcttctggagctggagagagaattctcctccaacatgtacctgtccaggctgaggaggatcgagattgccacctacctgagcctgtcagagaagcaggtgaagatctggtttcagaacaggagggtaaagcacaagaaagagaataagggctcccaaaggaacacccatgggggctgcaagtgcacagggccacaaggccattacccccgatcagaagacgaagattccttgtctacagcttcaacaagtgaggataaggaggtgtcacctttataaattgctctacctgcatacatgtctctgtgactctatggcacttatgatctacaccaggaaaactatattgactcatccaaatgcccctttattccacaatcagctcagttaaagcctttggacaaatctcagtttctgttgattttggggattgaatatatgtgtccctaggatgggaaaatgtcatgggttcgttttataaagaatgtgtttttgttacagtcagaaaattagtcggatgtaggtttttatgcaaaggtctgtaaatagtctcatgccctaacgttttgcaaatccacctgcgagtgaatagttttatacaaatttatatttatatttatttaaataaacgaagatatgggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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