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2018-10-20 19:39:57, GGRNA.v2 : RefSeq release 90 (Sep, 2018)

LOCUS       NM_001006706            2593 bp    mRNA    linear   VRT 28-OCT-2016
DEFINITION  Xenopus tropicalis claudin 5 (transmembrane protein deleted in
            velocardiofacial syndrome) (cldn5), mRNA.
ACCESSION   NM_001006706
VERSION     NM_001006706.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC075424.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC075424.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /map="1"
     gene            1..2593
                     /gene="cldn5"
                     /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf"
                     /note="claudin 5 (transmembrane protein deleted in
                     velocardiofacial syndrome)"
                     /db_xref="GeneID:448343"
                     /db_xref="Xenbase:XB-GENE-976044"
     misc_feature    143..145
                     /gene="cldn5"
                     /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf"
                     /note="upstream in-frame stop codon"
     CDS             167..817
                     /gene="cldn5"
                     /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf"
                     /codon_start=1
                     /product="claudin-5"
                     /protein_id="NP_001006707.1"
                     /db_xref="GeneID:448343"
                     /db_xref="Xenbase:XB-GENE-976044"
                     /translation="
MASAAIEILGLSLSILGWVGVILACGLPMWQVSAFIENNIVVAQIIWEGLWMSCVVQSTGQMQCKVYDSILALSQELQAGRALTVMASIVGLIGLLVTIVGAKCTNCLQGNSAKGRVLLAGGVIYILCGILVLIPLCWIANIIITEFYDPRVPASQKREMGAALYVGWAATALLLLGGSLLCCSFAMKDGISNLPVKYSAPRMPTSNGDYDKKNYV"
     misc_feature    179..676
                     /gene="cldn5"
                     /gene_synonym="awal; bec1; claudin-5; cpetrl1; tmvcf"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:304458"
ORIGIN      
ggagaataaaggagccggtacaacagagttagtaactccggcacaggaaagcgcttgttatccacttaccttctggggcacagagtgagcaaggaaaactagagatcctctggagaagccacaggtcgcaccgcacccaagttaaaagacgttaccaagcctggaaatggcatctgcagcgatcgagatccttggtctgtccctgagcatcctaggctgggtgggggtgatcctggcttgcgggctcccaatgtggcaagtgtcagcctttatagaaaataacatagtggtggcgcaaattatctgggaagggctgtggatgtcctgcgtggtgcaaagcacgggacagatgcagtgcaaagtatatgactccatccttgcccttagccaagagcttcaggctggcagagccctcaccgtcatggcctccatagtggggctcatcgggctgcttgtgaccatcgtgggtgccaagtgcactaactgcctgcaagggaacagcgcgaagggccgggtgctgctggccgggggtgtcatctacattctgtgcgggatcctggtcctcatcccgctctgttggatcgccaatatcatcattaccgagttctacgacccccgggtgccggcctcccagaagcgagagatgggggcagctctgtatgtggggtgggctgccactgcgctgctcctgctggggggctccctactgtgctgctcattcgccatgaaggatggaatcagcaatctgccggttaagtactctgcgccccgcatgcccacctccaatggggactatgataaaaagaactacgtgtaggtgagtggccccaggaactatccctcctccctgctggacctgtacataacttggctcccagacctacccctggggggcagctttgccaactggtacccaggcaggtgtgttccacggacctggcagcgactccgtccggttgggtttattacagattatgccaacctaaaacaaatctcatctctctaaaggggtcggcaatacttagtggcacagacaggacttcgggtttgaaactttatagacgtgcaatgtacatatgcagatatactgtgtatatttagttacaatggattaaccttctgcactgaccaggtctcttatttccagtttctcactgttctgggttgcaaggcatcttaatgcagccccccagctatcagggatccagcctacagcaggtgctggcagactgacccaacacagtctatttcttattctatgggaagggcaaaggataagttattgtgatctattgtgtaggatgtggcagctgggcatatctcattttatccccatacacatattggttgcctctaaagttcttattcaagatgaatgtctgtggataaaatccaccaacatgtgagttcaagcagataagctttgtgtgggagggtatccacttctaactcatgtacagattgtttcatttgttctgcagtgcacttacccagataaatgagacatgtatttagtcgaagtgcagacatttaaatgtataatattagactgtgtttaagggctcttacacaagtgctttaagttgtgttcagggcttccatgtgtctgaatgaatagagccacgtaggaaagaattgactgtttcatcctgcactcccctgtggtggaacccaggagaaatccactgctggggaaagcagggcaaatagagagagatacaatgtacatctatatctctgcccatttaggaaatgattggaaaaattaactgtctgatttatttatagaaaatgcctttatatctttgaagtgctacagaaccttgtagtgcattgccataaccagtttatctattatcaccccggttctgctaatataataaaatatataaatacatagcaagctgttgccttttgctgacactgctataaaggaggagcatgcccttgcacaagagcccttgtttcagggtgctggcctttcaatcctgtacccctaaatagcataagtaatagtctcccaatgttccaaggctacacacataatacatcaccatagaatgattaatttcatgataatggccagggatgatccagcttgtggccatttggggtggggtacattgagaaagcagatacaattttatctagagtagaaacccattgccatcaattagaatttcaacagttcatttatcattggttgctagtggcaactactccagagtaaaattactctagttttgcaaactcttgttatattcaaactgccagtgcccagctgcaggttagctatctgttaaactcactctgcgcaacaatttggcagggatgtcccccatcgctcctgacactgccatgaaggtaactggatatatttctgtgttgaccattctgtataatgcagggctggatttctttggtactgttaaaaaaagcactgcattctttgctttatttttttatttgtctacagttaatattatattcaatcaagtcttcagttattatagtgtatgcatcattttgtgcaaacctattaaatctctttatattatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]