2024-04-26 10:12:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001003098 804 bp mRNA linear MAM 19-JUN-2021 DEFINITION Canis lupus familiaris msh homeobox 2 (MSX2), mRNA. ACCESSION NM_001003098 VERSION NM_001003098.2 KEYWORDS RefSeq. SOURCE Canis lupus familiaris (dog) ORGANISM Canis lupus familiaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. REFERENCE 1 (bases 1 to 804) AUTHORS Haworth K, Breen M, Binns M, Hopkinson DA and Edwards YH. TITLE The canine homeobox gene MSX2: sequence, chromosome assignment and genetic analysis in dogs of different breeds JOURNAL Anim Genet 32 (1), 32-36 (2001) PUBMED 11419342 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AJ277753.1. On Jun 3, 2007 this sequence version replaced NM_001003098.1. ##Evidence-Data-START## Transcript exon combination :: AJ277753.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4547739, SAMEA4547741 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..804 /organism="Canis lupus familiaris" /mol_type="mRNA" /sub_species="familiaris" /db_xref="taxon:9615" /chromosome="4" /map="4" gene 1..804 /gene="MSX2" /note="msh homeobox 2" /db_xref="GeneID:403663" /db_xref="VGNC:VGNC:43455" CDS 1..804 /gene="MSX2" /function="transcription factor" /note="muscle segmentation homologue (MSX2); homeobox protein Hox-8; msh homeobox homolog 2; msh homeo box homolog 2" /codon_start=1 /product="homeobox protein MSX-2" /protein_id="NP_001003098.1" /db_xref="GeneID:403663" /db_xref="VGNC:VGNC:43455" /translation="
MASPSKGSDLFSSDEEGPAALAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKGASPRPADSASAGAALRPLLLPGHGAREAPSPGPPGKPFEAASVKSESAEDGAAWMQEPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPFPINSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS"
misc_feature 1..441 /gene="MSX2" /note="propagated from UniProtKB/Swiss-Prot (Q9GK08.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(427..441,445..447,496..498,514..516,553..555, 559..564,571..576,580..588,592..597) /gene="MSX2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 433..594 /gene="MSX2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(433..435,442..444,562..564,571..576,583..585) /gene="MSX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..379 /gene="MSX2" /inference="alignment:Splign:2.1.0" exon 380..804 /gene="MSX2" /inference="alignment:Splign:2.1.0" ORIGIN
atggcttctccgtccaaaggcagtgacctgttctcgtccgatgaggagggcccggcggcgctggccgggccgggcccggggcctgggggcgcggagggggcggccgaggagcgccgcgtcaaggtctccagcctgcccttcagcgtcgaggcgctcatgtcggacaagaagccgcccaagggggcgtccccgcggccggcagacagcgcctctgccggggccgccctgcggccgctgctgctgccgggacacggcgcccgggaagcccccagccccgggccgccggggaagcccttcgaggccgcctcggtcaagtcggagagcgccgaggacggagccgcgtggatgcaggagcccggcagatactcgccgccgccaagacatatgagccccaccacctgcaccctgcggaagcacaagaccaatcggaagccgagaacgcccttcaccacgtcgcagctcctcgccctggagcgcaagttccgccagaaacaatacctctccattgcagagcgcgcggagttctccagctctctgaacctcacagagacccaggttaaaatctggttccaaaaccgaagggccaaggcgaaaagactgcaggaggcagaactagaaaagctgaagatggctgcaaaacctatgctgccctctggcttcagccttcctttccccatcaactcgcctctgcaagcagcatccatatacggagcgtcctaccctttccatagacctgtgctccccatcccgcccgtcggactctatgcgaccccagtcggatatggcatgtaccatctatcctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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