2024-05-02 19:55:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001001130 2286 bp mRNA linear ROD 16-OCT-2021 DEFINITION Mus musculus zinc finger protein 85 (Zfp85), mRNA. ACCESSION NM_001001130 VERSION NM_001001130.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2286) AUTHORS Krebs CJ, Larkins LK, Price R, Tullis KM, Miller RD and Robins DM. TITLE Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression JOURNAL Genes Dev 17 (21), 2664-2674 (2003) PUBMED 14563677 REFERENCE 2 (bases 1 to 2286) AUTHORS Marine JC, Gilbert DJ, Bellefroid EJ, Martial JA, Ihle JN, Copeland NG and Jenkins NA. TITLE Chromosomal location of fifteen unique mouse KRAB-containing zinc finger loci JOURNAL Mamm Genome 7 (6), 413-416 (1996) PUBMED 8662221 REFERENCE 3 (bases 1 to 2286) AUTHORS Bellefroid EJ, Marine JC, Matera AG, Bourguignon C, Desai T, Healy KC, Bray-Ward P, Martial JA, Ihle JN and Ward DC. TITLE Emergence of the ZNF91 Kruppel-associated box-containing zinc finger gene family in the last common ancestor of anthropoidea JOURNAL Proc Natl Acad Sci U S A 92 (23), 10757-10761 (1995) PUBMED 7479878 REFERENCE 4 (bases 1 to 2286) AUTHORS Ihle JN, Smith-White B, Sisson B, Parker D, Blair DG, Schultz A, Kozak C, Lunsford RD, Askew D, Weinstein Y et al. TITLE Activation of the c-H-ras proto-oncogene by retrovirus insertion and chromosomal rearrangement in a Moloney leukemia virus-induced T-cell leukemia JOURNAL J Virol 63 (7), 2959-2966 (1989) PUBMED 2542606 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DV658296.1, BK001637.1 and BC055337.1. On Feb 7, 2019 this sequence version replaced NM_001001130.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR7345562.5023495.1, BC055756.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## CDS uses downstream in-frame AUG :: upstream AUG and CDS extension is not conserved RefSeq Select criteria :: based on expression ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-650 DV658296.1 39-688 651-2027 BK001637.1 587-1963 2028-2286 BC055337.1 1960-2218 FEATURES Location/Qualifiers source 1..2286 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="13" /map="13 34.74 cM" gene 1..2286 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="zinc finger protein 85" /db_xref="GeneID:22746" /db_xref="MGI:MGI:107767" exon 1..140 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /inference="alignment:Splign:2.1.0" misc_feature 15..17 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="upstream_AUG_codon; putative N-terminal extension: MTPLDRTLLSVLPGSFYVCDSPNSAVFSKLGQCGLFFALN" CDS 135..1556 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="KRAB-zinc finger protein 71; regulator of sex-limitation candidate 2; zinc finger protein 85, related sequence 1" /codon_start=1 /product="zinc finger protein 85" /protein_id="NP_001001130.1" /db_xref="CCDS:CCDS36717.1" /db_xref="GeneID:22746" /db_xref="MGI:MGI:107767" /translation="
MKDLLSFTDVAIDFSADECECLDSAQWNLYKEVMLENYSNLVFLGLAFSKPYLVTFLEQSSDPWSMKRKESAAIHLGSKPHKCKECGKAFDRNSVLIQHQRIHTGERSYKCEECGKSFNYSSSFKQHQRIHTGEKPYKCEVCGKAFNCSSYLGKHQRIHTGEKRYKCEECGKPFTNCSGLIVHRRVHTGEKPYKCEECGKAFSVGTTLSNHQRIHTGEKPYKCEECGMAFNVRFLLSKHQQTHTGEKPYKCKECGKAFNCSSSLHQHQQIHRGEKLYKCDDCGQAFSCSSYLYKHRRIHTGMKPSKCKECGKTFYCSVNLIYHQRIHTGEKPYKCNECGKAFSIYSRFMKHQRIHSGEKPYKCKECEKAFNNCYNLIQHQRIHTGEKPYKCKDCGKAFHYTSSLAQHERIHTGEKPYKCEECGKAFNSSSNLKNHWRLHTGEKPYKCEQCGKAFKDCSSFTRHYRIHTRENPD"
misc_feature 147..329 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="krueppel associated box; Region: KRAB; smart00349" /db_xref="CDD:214630" misc_feature 375..>527 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 381..446 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 381..443 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(396..398,402..404,408..410,414..419,426..431, 438..440,480..482,486..488,498..503,510..515,522..524, 564..566,570..572,576..578,582..587,594..599,606..608) /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature order(396..398,414..416,435..437,441..443,462..464, 483..485) /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 453..1550 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 465..527 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 465..527 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 549..611 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 633..695 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 717..779 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 801..863 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 885..947 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 969..1031 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1053..1115 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1137..1199 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1221..1283 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1236..1238,1242..1244,1248..1250,1254..1259, 1266..1271,1278..1280,1320..1322,1326..1328,1338..1343, 1350..1355,1362..1364,1404..1406,1410..1412,1416..1418, 1422..1427,1434..1439,1446..1448) /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1305..1367 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1389..1451 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1473..1535 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" exon 141..267 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /inference="alignment:Splign:2.1.0" exon 268..363 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /inference="alignment:Splign:2.1.0" exon 364..2286 /gene="Zfp85" /gene_synonym="KRAB19; Rslcan2; Zfp71; Zfp85-rs1" /inference="alignment:Splign:2.1.0" ORIGIN
ctctctctttctgtatgaccccgctagacaggactctgctctctgtgcttccgggttctttttacgtttgtgattctccaaactctgcggtgttctcaaagttgggacagtgtggcttgttcttcgcgcttaacatgaaggaccttctgtcattcacagatgtggccattgatttctctgcagatgagtgtgaatgtctggactctgctcagtggaatttgtataaggaagtgatgttggagaattacagcaaccttgtgttcctgggtcttgctttctctaagccatacctggtcacatttctggagcagagttcagatccgtggagcatgaagaggaaagaatcagcggccatccatctaggatcaaaaccccataaatgtaaagagtgtgggaaggcctttgataggaactcagtccttattcagcatcaaagaatacatactggagagagatcctataaatgtgaagaatgtggcaaatcatttaattattcttccagctttaaacagcaccaaagaattcatactggcgagaaaccctacaaatgtgaagtgtgtggcaaagcttttaactgttcttcatatctgggtaagcatcaaagaatccacactggagagaaacgctacaaatgtgaagaatgtggtaaaccttttactaattgttcaggacttattgttcaccgaagagtacatactggagagaaaccctacaaatgtgaagaatgtggcaaggcctttagtgttggcacaacactctctaaccatcagagaattcacactggagagaaaccttacaaatgtgaagaatgtggtatggcctttaatgttcgctttcttctttctaagcaccagcaaactcatactggggagaaaccctacaaatgtaaagaatgtggcaaagcttttaactgttcttccagccttcaccaacaccaacagattcataggggagagaaactctataagtgtgatgactgtgggcaggcctttagctgttcatcatatctgtataagcatcgtcgaatccatactggcatgaaacccagcaaatgcaaggaatgtggcaagactttttactgttctgtaaatcttatttaccaccagagaattcatactggagagaaaccatataaatgtaatgagtgtggaaaagcttttagcatttactcaagatttatgaaacaccagcgaatacatagtggagaaaaaccctataaatgcaaagaatgtgagaaggcctttaataattgttataatctaattcaacaccaaagaattcatactggagagaaaccctacaaatgtaaagactgtggcaaagcctttcattatacttcaagccttgctcaacatgaaagaattcacactggagagaaaccctacaaatgtgaagaatgtggcaaggcctttaactcttcttcgaatcttaaaaatcattggagactccatactggtgagaagccttacaaatgtgaacaatgtgggaaagcctttaaagactgttctagctttactcgacactatagaattcatactagagaaaacccagactagctcaaccatgtcgcaaagtcttccataatcatttactgataattctacactaaaaaaattcatatgagaaggaaaggaacaagggaagaccgttaataatagctcagcccttatttaccctcttccattaaatgcaggaaagatcttataatgtgaagaagatggccgtgatgagcaatctatacttatgcagcatcaaaattttcattttacagaaactctgcaaatgcaagtattgtgggaaatgcacactcagtaccagtgaattataataactgtatacatgcataatgactcaggaaggaacactgtcaagtacataaaactgagacaaccgaactcttacagtgagaagcactgtgtacactgtgttgcaagagcacatggatcttaagagatataagagacaaattccaggagttgtagagaatttagccaaggaataaatactgcttataatcggcaggaaaatgtttggtgtaatataaaaactcattacacactttagatcatgcagataagtctgtgaggacatcagtatgttataaatccaaattataacctcagttttgtcaagtgaaaagaacacaaggactagtgattttatcagaagaacaagactgagtcctgaggtttccgagtccttttttttccccaaagaccatatatacattattggaatatgaagtttagtaacttttgtaaataaaaagaagctgtttttaatgta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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