GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2020-04-09 13:44:20, GGRNA : RefSeq release 99 (Mar, 2020)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Homo sapiens retina and anterior neural fold homeobox 2 (RAX2), transcript variant 2, mRNA. (2162 bp)
cagccgcatcgcccaagagctctgagcaaggaggctgtcgcggggccgagaacccgctgggactggcaagcacggctggcccagtgcagcaggagggggccctgaggcatgggatgggacagtctgggccagcgccacctcccgggacagaagtgcggcaccagggcaggagctgcagtagctaccctccccgtctccagcctgggctccccagatcactcccagatcaccaggtcaccccatctctaggcggcacctcacacaccagtcctgtggtccaacgccccgccatcacccaatgtcaccgcacaccaggcagtggggacacggcagtaagcacaagaaagatttttttttttaaagctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagaccagcctgggtgacacagcaagaccccatctccacaaacgtttttaaaatgtgccgggtgtactggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcacttgagcccagaaggtcgaggctgcagggagctgtgatcacactg...
position 1599 1641 1657 1705 1724 1790 1814 1819 1962 1979 1982
Synonym: ARMD6; CORD11; QRX; RAXL1
NM_032753.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens retina and anterior neural fold homeobox 2 (RAX2), transcript variant 1, mRNA. (2421 bp)
cagccgcatcgcccaagagctctgagcaaggaggctgtcgcggggccgagaacccgctgggactggcaagcacggctggcccagtgcagcaggagggggccctgaggcatgggatgggacagtctgggccagcgccacctcccgggacagaagtgcggcaccagggcaggagctgcagtagctaccctccccgtctccagcctgggctccccagatcactcccagatcaccaggtcaccccatctctaggcggcacctcacacaccagtcctgtggtccaacgccccgccatcacccaatgtcaccgcacaccaggcagtggggacacggcagtaagcacaagaaagatttttttttttaaagctaaaccaggccaggtgcggtggctcatgcctgtaatcccagtgctttgggaggctgaggtgggaggattgcttgagaccagcctgggtgacacagcaagaccccatctccacaaacgtttttaaaatgtgccgggtgtactggtgcacacctgtcatcccagctacccaagaagctgaggcaagaggatcacttgagcccagaaggtcgaggctgcagggagctgtgatcacactg...
position 1858 1900 1916 1964 1983 2049 2073 2078 2221 2238 2241
Synonym: ARMD6; CORD11; QRX; RAXL1
NM_001319074.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/1552311_a_at
lang : en | div : | spe : | query_string : 1552311_a_at | format : html | download : 

0.000 | 0.000 | search_start;
0.076 | 0.076 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TCTCCACAAACGTTTTTAAAATGTG)?to=0&format=json
0.084 | 0.007 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GGGACACGGCAGTAAGCACAAGAAA)?to=0&format=json
0.354 | 0.271 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GGCAGGAGCTGCAGTAGCTACCCTC)?to=0&format=json
0.361 | 0.007 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GCATGGGATGGGACAGTCTGGGCCA)?to=0&format=json
0.368 | 0.007 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:ATGTGCCGGGTGTACTGGTGCACAC)?to=0&format=json
0.374 | 0.006 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AGGTCACCCCATCTCTAGGCGGCAC)?to=0&format=json
0.381 | 0.007 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AGATCACTCCCAGATCACCAGGTCA)?to=0&format=json
0.388 | 0.006 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AGAAGTGCGGCACCAGGGCAGGAGC)?to=0&format=json
0.395 | 0.008 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:ACGGCAGTAAGCACAAGAAAGATTT)?to=0&format=json
0.403 | 0.008 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AATGTCACCGCACACCAGGCAGTGG)?to=0&format=json
0.411 | 0.008 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AAAATGTGCCGGGTGTACTGGTGCA)?to=0&format=json
0.445 | 0.034 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TCTCCACAAACGTTTTTAAAATGTG)%26(nt:GGGACACGGCAGTAAGCACAAGAAA)%26(nt:GGCAGGAGCTGCAGTAGCTACCCTC)%26(nt:GCATGGGATGGGACAGTCTGGGCCA)%26(nt:ATGTGCCGGGTGTACTGGTGCACAC)%26(nt:AGGTCACCCCATCTCTAGGCGGCAC)%26(nt:AGATCACTCCCAGATCACCAGGTCA)%26(nt:AGAAGTGCGGCACCAGGGCAGGAGC)%26(nt:ACGGCAGTAAGCACAAGAAAGATTT)%26(nt:AATGTCACCGCACACCAGGCAGTGG)%26(nt:AAAATGTGCCGGGTGTACTGGTGCA)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.446 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]