2024-05-15 11:56:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001410349 2295 bp mRNA linear ROD 10-SEP-2023 DEFINITION Mus musculus ST3 beta-galactoside alpha-2,3-sialyltransferase 5 (St3gal5), transcript variant 3, mRNA. ACCESSION NM_001410349 XM_036165982 VERSION NM_001410349.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2295) AUTHORS Chowdhury S, Kumar R, Zepeda E, DeFrees S and Ledeen R. TITLE Synthetic GM1 improves motor and memory dysfunctions in mice with monoallelic or biallelic disruption of GM3 synthase JOURNAL FEBS Open Bio 13 (9), 1651-1657 (2023) PUBMED 37401916 REMARK GeneRIF: Synthetic GM1 improves motor and memory dysfunctions in mice with monoallelic or biallelic disruption of GM3 synthase. REFERENCE 2 (bases 1 to 2295) AUTHORS Bharathi SS, Zhang BB, Paul E, Zhang Y, Schmidt AV, Fowler B, Wu Y, Tiemeyer M, Inamori KI, Inokuchi JI and Goetzman ES. TITLE GM3 synthase deficiency increases brain glucose metabolism in mice JOURNAL Mol Genet Metab 137 (4), 342-348 (2022) PUBMED 36335793 REMARK GeneRIF: GM3 synthase deficiency increases brain glucose metabolism in mice. REFERENCE 3 (bases 1 to 2295) AUTHORS Arends M, Weber M, Papan C, Damm M, Surma MA, Spiegel C, Djannatian M, Li S, Connell L, Johannes L, Schifferer M, Klose C and Simons M. TITLE Ganglioside lipidomics of CNS myelination using direct infusion shotgun mass spectrometry JOURNAL iScience 25 (11), 105323 (2022) PUBMED 36310581 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 2295) AUTHORS Strekalova T, Veniaminova E, Svirin E, Kopeikina E, Veremeyko T, Yung AWY, Proshin A, Tan SZK, Khairuddin S, Lim LW, Lesch KP, Walitza S, Anthony DC and Ponomarev ED. TITLE Sex-Specific ADHD-like Behaviour, Altered Metabolic Functions, and Altered EEG Activity in Sialyltransferase ST3GAL5-Deficient Mice JOURNAL Biomolecules 11 (12), 1759 (2021) PUBMED 34944404 REMARK GeneRIF: Sex-Specific ADHD-like Behaviour, Altered Metabolic Functions, and Altered EEG Activity in Sialyltransferase ST3GAL5-Deficient Mice. Publication Status: Online-Only REFERENCE 5 (bases 1 to 2295) AUTHORS Suzuki M, Nagane M, Kato K, Yamauchi A, Shimizu T, Yamashita H, Aihara N, Kamiie J, Kawashima N, Naito S and Yamashita T. TITLE Endothelial ganglioside GM3 regulates angiogenesis in solid tumors JOURNAL Biochem Biophys Res Commun 569, 10-16 (2021) PUBMED 34216992 REFERENCE 6 (bases 1 to 2295) AUTHORS Takashima S and Tsuji S. TITLE Comparison of genomic structures of four members of beta-galactoside alpha2,3-sialyltransferase genes in the mouse JOURNAL Cytogenet Cell Genet 89 (1-2), 101-106 (2000) PUBMED 10894948 REFERENCE 7 (bases 1 to 2295) AUTHORS Kapitonov D, Bieberich E and Yu RK. TITLE Combinatorial PCR approach to homology-based cloning: cloning and expression of mouse and human GM3-synthase JOURNAL Glycoconj J 16 (7), 337-350 (1999) PUBMED 10619706 REFERENCE 8 (bases 1 to 2295) AUTHORS Takashima S, Tachida Y, Nakagawa T, Hamamoto T and Tsuji S. TITLE Quantitative analysis of expression of mouse sialyltransferase genes by competitive PCR JOURNAL Biochem Biophys Res Commun 260 (1), 23-27 (1999) PUBMED 10381338 REFERENCE 9 (bases 1 to 2295) AUTHORS Fukumoto S, Miyazaki H, Goto G, Urano T, Furukawa K and Furukawa K. TITLE Expression cloning of mouse cDNA of CMP-NeuAc:Lactosylceramide alpha2,3-sialyltransferase, an enzyme that initiates the synthesis of gangliosides JOURNAL J Biol Chem 274 (14), 9271-9276 (1999) PUBMED 10092602 REFERENCE 10 (bases 1 to 2295) AUTHORS Kono M, Takashima S, Liu H, Inoue M, Kojima N, Lee YC, Hamamoto T and Tsuji S. TITLE Molecular cloning and functional expression of a fifth-type alpha 2,3-sialyltransferase (mST3Gal V: GM3 synthase) JOURNAL Biochem Biophys Res Commun 253 (1), 170-175 (1998) PUBMED 9875239 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC127244.3. On Aug 4, 2022 this sequence version replaced XM_036165982.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR13422592.77618.1, SRR7345562.3913793.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849379, SAMN00849381 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-175 AC127244.3 89481-89655 176-236 AC127244.3 90790-90850 237-360 AC127244.3 120137-120260 361-472 AC127244.3 123925-124036 473-816 AC127244.3 134013-134356 817-1003 AC127244.3 138942-139128 1004-1162 AC127244.3 140892-141050 1163-2295 AC127244.3 145304-146436 FEATURES Location/Qualifiers source 1..2295 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 32.24 cM" gene 1..2295 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /note="ST3 beta-galactoside alpha-2,3-sialyltransferase 5" /db_xref="GeneID:20454" /db_xref="MGI:MGI:1339963" exon 1..175 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 176..236 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 237..360 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" CDS 239..1402 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /EC_number="2.4.3.9" /note="isoform b is encoded by transcript variant 3; sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase); ST3GalV; ganglioside GM3 synthase; mST3Gal V; GM3-specific sialytransferase" /codon_start=1 /product="lactosylceramide alpha-2,3-sialyltransferase isoform b" /protein_id="NP_001397278.1" /db_xref="GeneID:20454" /db_xref="MGI:MGI:1339963" /translation="
MPSEFTSAKLRSDCSRTSLQWYTRTQHKMRRPSLLIKDICKCTLVAFGVWLLYILILNYTAEECDMKRMHYVDPDRIKRAQSYAQEVLQKECRPRYAKTAMALLFEDRYSINLEPFVQKVPTASEAELKYDPPFGFRKFSSKVQSLLDMLPEHDFPEHLRAKACKRCVVVGNGGILHGLELGHALNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDVEYYANDLFVTVLFKSVDFKWLQAMVKNESLPFWVRLFFWKQVAEKVPLQPKHFRILNPVIIKETAFDILQYSEPQSRFWGHDKNIPTIGVIAVVLATHLCDEVSLAGFGYDLSQPRTPLHYFDSQCMGAMHWQVMHNVTTETKFLLKLLKEGVVEDLSGGIH"
misc_feature 623..1372 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" exon 361..472 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 473..816 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 817..1003 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 1004..1162 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" exon 1163..2295 /gene="St3gal5" /gene_synonym="3S-T; Siat9; [a]2" /inference="alignment:Splign:2.1.0" ORIGIN
ggactgtccggggctgaattggcgcgagcgcggcgccgggggctggctggggcgcggggccccgggctggcggcttgccagcgctccctccctagcatgcacacagaggcggtgggcggcgcggcgcggaggccccagaagctgcgaagccaagcagcggcacctgcctgccgagccctacgcaaatgctgggcctgagaagagggatttgtctgctgaaagaaaggaccagaaaacaatgccaagtgagttcacctctgcaaagctgagaagtgattgctcaaggacctccctgcaatggtacacccgaacccagcacaagatgagaagacccagcttgttaataaaagacatctgcaagtgcacgttggttgcatttggagtctggctcctgtacatcctcattttgaattacaccgctgaagaatgtgacatgaaaagaatgcactatgtggaccctgaccggataaagagagctcagagctatgctcaggaagtcttgcagaaggaatgtcggcccaggtacgcgaagacggctatggctctgttatttgaggacaggtacagcatcaacttggagccttttgtgcagaaggtccccacggccagtgaagctgagctcaagtatgacccgccttttggattccggaagttctccagtaaagtccagagcctcttggatatgctgcccgaacatgactttcctgaacacttgagagccaaggcctgcaagcgctgtgtggttgttgggaacgggggcatcctgcacggactagagctgggtcacgccctcaaccagttcgatgtggtaataaggttgaacagtgcgccagttgagggttactctgaacacgttgggaataaaactactataaggatgacttacccagagggtgcgccactgtcggacgttgaatactacgccaatgatttgttcgttactgttttatttaagagtgttgatttcaagtggcttcaagcaatggtaaaaaatgaaagcctgcccttttgggttcgcctcttcttttggaagcaagtggcagaaaaagtcccactccagccaaagcacttcaggattttgaacccagttatcatcaaagaaactgccttcgacatccttcagtactcagagcctcagtcaagattctggggccatgataagaacatccccacgatcggcgtcattgccgttgtcttggctacacatctgtgtgatgaagtcagcctggcaggctttggctacgacctcagtcaacccaggacccctctgcactactttgacagtcagtgcatgggcgccatgcactggcaggtcatgcacaatgtgaccacagagaccaagttcctcctgaagctcctcaaggagggcgtggtggaggacctcagcggcggcatccactgagaactcggaacacggcaaacctcacccagcaccgcagctgagagcgtggtgagcagcctccacagggacttcaccctgcagctgcttcgatgtgcagctagtgttttcaaactccacattttttttaaaaaaggaaaagaaagaacaacagcaacaacaaaagctctgctctgtgcacctcttcgtcctatttatttgaagtcagtgttggattttgcacagttttgtaagttaatcttaagaatgggattggaaggacttttcaaagagaattgtatagtttattgttttttaaggaagtaatttaatttgcagaaactgtacacacgtactctgctcaggtgttgaggtgggaggagaggggcttctggcccctggatgatggctgtgatgcccgatactggggtctgctgctctgtttggtagaactgatggcagagaaacttcctgcctccaggataaagggcttactcatcacctctggcagctgctagacaagttcataacccctttctgctagtccatctgccagctggctcgcaggactcaggcagggcagctgtcccggaggctgctggttggtgagccactgtcagctgagcgccgtgatgttgccccagggtggaagaagccacacttcctacactgtcagggcacttttaaacttctggaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcattctgcccttccaaatcatctaagtgttatttaaggcactctgctgtttgtatgagatggttcatagaaattatgacaaagcctttgttatccaggccatgggaagaggaaaaagaaaagaaagaaagaaaagaataaaagcttttgaggagcccctgtga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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