2024-05-17 02:05:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021473407 2672 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio general transcription factor IIIC, polypeptide 4 (gtf3c4), mRNA. ACCESSION XM_021473407 VERSION XM_021473407.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018395085.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2672 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="21" /map="unlocalized" gene 1..2672 /gene="gtf3c4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 57 samples with support for all annotated introns" /db_xref="GeneID:568510" /db_xref="ZFIN:ZDB-GENE-041008-147" CDS 109..2421 /gene="gtf3c4" /codon_start=1 /product="general transcription factor 3C polypeptide 4" /protein_id="XP_021329082.1" /db_xref="GeneID:568510" /db_xref="ZFIN:ZDB-GENE-041008-147" /translation="
MAALRSNSSSEKAGTASEAPSGPEDDFWAGQGPIVLRDPAIKLLSPVSGVEPLSWAEDHRLAACNTNSVSLIELVCDIHSLSQNLVLHRTHIPVPTTTCELKVGSEKDVRAVKESFANSKDPVVSQMIMIDRVINPQCGPLHGVKYTSWSPLGCDKLGRCLLAFLTLDNRLTIHSSHLQLQWTLLLDLTELYGEMLKTRKYSAQNDGTPPVSFKDFDELQRRFRMQTPVRMEWSSLCSMQQVQSDNAHKDINTVLLAVLMENGDVVVWQFSLPLNGKESVVSCSTIKSGVSSPSALTWWQYEHSGRKMSGLIIGSSVGPVKILPVNIKAVKGYFTLRQPVVLWQESDQIPVHNIKCITLFHPHQKCNCSLVVAARGPYIFWCLLLISKAGLNVHNSHITGLHSTPIISMTACHNNGTVLTCSLDGKVKKLTTVFTDLAVEFKQEEIVLPEGVAGRRIHGISISPNSAYLAVLSNEGMNNGFHPVALNYQVQFITFKTPDEAAAKMLDAHSLFRNSDLLDLLRWRILKDKSIPSAYENNLEEKLQTSGSTYLWRLKLFFLRTLHKSMQKTPSEALWQPRRRSGQSLVGDGDEGGGGDEDEMMEDRQGDAEIREREERMKEIGSRIEAVESHLIRENMKKVLGEVYLHTCVTQNTRVPTKGVCDFLTNDPANEDRAAKVLIGHIMNKMNKQTFPEYCALCKEILPFTDCKRAECKNGHRWLRCALSYQACQGVTYRRCLLQDSIASVAEPEDSDWIKKILQGPCIFCDSPFY"
misc_feature 244..810 /gene="gtf3c4" /note="Transcription factor IIIC subunit delta N-term; Region: TFIIIC_delta; pfam12657" /db_xref="CDD:432701" misc_feature 841..2112 /gene="gtf3c4" /note="Domain of unknown function (DUF5921); Region: DUF5921; pfam19336" /db_xref="CDD:437168" misc_feature 2185..2403 /gene="gtf3c4" /note="Putative zinc-finger of transcription factor IIIC complex; Region: zf-TFIIIC; pfam12660" /db_xref="CDD:372246" ORIGIN
acgtaattgatgtcaatctggcaacccaggtcatgctgcgctcgtgaaatccctcctcctccggcaccgtaacttcctggagacgggctttatttttatacagaaaaaatggcggcgttacgctcaaacagttcttcagagaaagcagggaccgcgtctgaagccccgtcaggaccggaggatgatttttgggcgggacagggaccaatagtgctgcgggatcctgcgattaaattgttgagtccggttagcggtgtggagccgctgtcgtgggcagaagatcacagactggcggcctgcaacacgaacagcgtgtctctgattgagctggtgtgtgacatacacagtctcagtcaaaacctggtgctgcatcgcactcacatccccgtcccgaccaccacatgtgaactcaaggtgggctcagaaaaagatgtgagggctgttaaagaaagctttgccaatagtaaagacccagtagtaagccaaatgatcatgatagacagagtcatcaatcctcaatgtggacctctccatggcgtcaagtacactagttggtcaccgttaggctgtgacaaactcggccgctgccttcttgctttcctaacacttgacaatcgtctcacaatccacagcagtcacttgcaactgcagtggacgctactgctggaccttacagaactatatggcgaaatgttaaaaaccaggaaatactccgctcagaatgatggcacaccaccggtctcctttaaagacttcgatgaactgcagcgtcggtttcgtatgcagacaccagtgcgcatggagtggtccagtttgtgcagtatgcagcaagttcagagcgataacgctcataaagatatcaacacagttcttctagctgtactcatggagaatggagacgtggtggtgtggcagttcagcttgcccctaaacggaaaggaatcagtggtgtcatgcagcaccatcaaatctggtgtgtcgtcaccaagcgcgctcacctggtggcaatatgagcacagtgggcggaaaatgagcggactgatcatagggagctccgtaggacctgtaaagatccttccagtcaacattaaggcagtgaagggttacttcaccctcaggcagcctgtggttttgtggcaggagagcgaccagattcctgtccacaacatcaaatgcatcacactcttccatccgcaccagaaatgcaactgcagtttagtggttgcggcacgtggtccgtatatcttctggtgcttactgctgatctccaaagctggtctgaatgttcacaattcccacatcacgggtcttcattccacccctatcatatccatgacggcttgccacaataatgggactgttttaacatgctcactagatgggaaggttaagaagctaacgactgttttcacagacctagctgtcgagttcaagcaagaagagattgttctgcctgaaggagtcgcgggtcgacggatacacggtatatcaatcagtccaaacagtgcctacttggctgttctctccaatgagggtatgaacaatggcttccatcctgtcgctctcaactaccaggtacagttcatcacctttaagactccagatgaagcagcagctaagatgcttgatgctcacagtctctttagaaactctgatttgctggatttgttacgatggcggatactaaaagacaaaagcatcccttcggcctacgagaataatctagaagagaagctgcaaacctcagggtccacttacctgtggcgtcttaagcttttctttctcagaacgctccacaagtccatgcagaaaactccttcagaggctctgtggcagccaaggcgaagaagtggtcagagtttagttggtgatggtgatgaagggggtggaggtgatgaagatgagatgatggaggacagacagggggatgcagaaattagggaaagagaggagagaatgaaagagattggcagcaggatcgaagctgtggagtcccatctgatccgggagaacatgaagaaggtgctgggcgaggtgtatctgcacacctgtgtcactcaaaacacacgtgtacccactaaaggtgtgtgtgacttcctcacaaatgaccctgctaatgaagacagggcagccaaggtgctgataggtcatatcatgaataagatgaataaacagacatttccagagtattgcgctctctgtaaagaaattctgcccttcaccgactgcaagcgggcagagtgcaagaatggacacaggtggctcaggtgtgcgctgtcatatcaggcctgtcagggtgtgacataccgccgctgtctattgcaggacagtattgcctcagtagcagagcctgaggattcagactggatcaagaaaatcctccaaggtccctgcatcttctgcgattctcctttctactgaagcctcgggactaaataaaagtctccacgactgactactggatcacttaagcgggctacataaatgactaaaacgcctttctttacttgaaagagaaacatttgaaagccataaagtattctttaattattttgtaatataagacattcgggagatttttcctctcaacagatctttattttaaagccaaaaaagggtctaatttttatacaatgaaaactgtatatgttaataaattattccactgtaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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