2024-05-15 12:01:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005157696 1931 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio odorant receptor, family D, subfamily 111, member 1 (or111-1), transcript variant X1, mRNA. ACCESSION XM_005157696 VERSION XM_005157696.2 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 24, 2014 this sequence version replaced XM_005157696.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1931 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="15" gene 1..1931 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="odorant receptor, family D, subfamily 111, member 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 68 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:58116" /db_xref="ZFIN:ZDB-GENE-000329-16" CDS 175..1155 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /codon_start=1 /product="odorant receptor, family D, subfamily 111, member 1 isoform X1" /protein_id="XP_005157753.1" /db_xref="GeneID:58116" /db_xref="ZFIN:ZDB-GENE-000329-16" /translation="
MSSVNASFSKNISIVHPEYFFVIGLTGIGYSSYYYIFLFITYFITVVGNTAVILIIVLDRRLHSAKYIGMFNLALADFGEANALIPNMMKTFLFDSQYIYYNACMANMFFVFLFSTMQSFTLVVMAYDRLIAICLPLRYHSIVNNSNMILIFSAIWAFNSSVVALMVSLIDRLSFCESNMIQSYFCDHGPVYRLACSDISKNKIMAYVISAMYIIAPMVVIVFSYLGIFLALIKITTWEGRLKALKTCVSHLLLVGIFFLPLFCTYLAQLLLSLNPNARVISTSLSYAIPPMLNPIIYVLNTGEIKDLIRKMLKSRSAPIRENISK"
misc_feature 280..1074 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:452889" misc_feature 280..348 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:410628" misc_feature 373..441 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:410628" misc_feature 487..555 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:410628" misc_feature 622..672 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:410628" misc_feature 781..852 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:410628" misc_feature 907..975 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:410628" misc_feature 991..1074 /gene="or111-1" /gene_synonym="olfr2.6; or2.6; orzf1i; ZF1I; ZF1l; zgc:194674; zgc:194699" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:410628" ORIGIN
accgccaaagatctcggtggcatgcttgaataaggacaaacgtttatgcggtattggttccgtcgagtttacaagacagtcactgtcattgctggctctaaaactttggagttattcaaatattatgcaaagttattttaaaagatttttcaaaacacaagacgcaaagctgccatgagttctgtaaatgcaagtttttccaagaatatctccatcgttcatcctgaatactttttcgtcattgggctcacaggtatagggtacagcagttattactatatattcttattcatcacgtatttcataactgtagttgggaatactgcagtcattctcattatagttcttgaccggaggctgcacagtgcaaagtacattggtatgtttaacttggccttggctgactttggggaagctaacgcactgattcctaacatgatgaagacttttctgtttgactctcagtacatctactacaatgcttgtatggcaaatatgttttttgtgttcctctttagtactatgcaaagtttcactcttgttgttatggcgtatgatcgtttaattgcaatttgtttgccattgagatatcatagcattgtcaataattccaatatgattttaattttctcagcaatatgggcttttaattcttctgtggtggccttgatggtgtctttgattgaccgactttcattctgtgaatctaatatgatacagagttatttttgtgatcatggaccagtgtataggttggcatgcagtgacattagcaaaaataagattatggcgtatgtcatttcagctatgtacattatagcaccaatggtcgttattgtcttttcatatctgggcatttttcttgctttaatcaaaatcacaacttgggaaggacgattaaaagcactgaagacctgtgtgtctcacctgttgttagtaggaatttttttcctccccttattctgcacataccttgcccagctcttgctttcactgaatcctaatgccagagtcatcagcacatctctgtcatatgcaattccaccaatgctaaatcctattatttatgttttaaacacaggtgaaattaaggacctaattcgaaaaatgcttaaaagcagatctgcaccgatcagagagaacatttccaaatgaggctgtaaaatttttcattatttaattgggtctgtttgacgctagaaaagtttgttaattatatatcctcataatcaattcaaattctcaaagaaatataatatatgaaactgttctgtgacctttattaatcaagctggtttgcttttgttctattgatattgtgacagtaaatgaagaagtaaaaaacgtgatttaagtgaccaatcattgccatagtatgttgacatattttatacaaccttaaacacatcattcactgtgatttacttgtatttttggttgataaaatcaacttaaaagtgtgattaaaataaatattatttcaaaatgtttttctttttttccataagctaatgttataatgagcatgttggtctccacatttcccattcttctctgtatagtatacataacatgaaagcataatacacacaaatgtaagtttccatttattgtgtctgtttttaaaggtcatcaaaggtcataatgacctctttgatactgaaaggtaataacacacatcaatgtaaagtctcagcctcataatggtcttttactgccctctactggtatcttcaagtaggtgcataatgtttgagtctatgtatcttaacccagacagtgtcatataattattatttcttcaaaatgtctttaaatttggaaaccaatgtttatcctgaaatatgcttgttggtgtaactttaatatgtttaactctaaaattttgtaagaatataactgttgtaaaaataaaagtcttctaatcttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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