2024-05-17 02:36:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_213430 1748 bp mRNA linear VRT 21-AUG-2023 DEFINITION Danio rerio phospholipase A2, group XIIB (pla2g12b), mRNA. ACCESSION NM_213430 NM_213207 VERSION NM_213430.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1748) AUTHORS Jawahar J, McCumber AW, Lickwar CR, Amoroso CR, de la Torre Canny SG, Wong S, Morash M, Thierer JH, Farber SA, Bohannan BJM, Guillemin K and Rawls JF. TITLE Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding JOURNAL BMC Genomics 23 (1), 225 (2022) PUBMED 35317738 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1748) AUTHORS White RJ, Mackay E, Wilson SW and Busch-Nentwich EM. TITLE Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants JOURNAL Elife 11, e72825 (2022) PUBMED 35175196 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1748) AUTHORS Feng J, Song G, Wu Y, Chen X, Pang J, Xu Y, Shen Q, Guo S and Zhang M. TITLE Plasmalogens improve swimming performance by modulating the expression of genes involved in amino acid and lipid metabolism, oxidative stress, and ferroptosis in an Alzheimer's disease zebrafish model JOURNAL Food Funct 12 (23), 12087-12097 (2021) PUBMED 34783821 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1748) AUTHORS Thierer JH, Ekker SC and Farber SA. TITLE The LipoGlo reporter system for sensitive and specific monitoring of atherogenic lipoproteins JOURNAL Nat Commun 10 (1), 3426 (2019) PUBMED 31366908 REMARK Erratum:[Nat Commun. 2020 Jul 21;11(1):3707. PMID: 32694507] Publication Status: Online-Only REFERENCE 5 (bases 1 to 1748) AUTHORS Anderson JL, Mulligan TS, Shen MC, Wang H, Scahill CM, Tan FJ, Du SJ, Busch-Nentwich EM and Farber SA. TITLE mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces unexpected transcripts that escape nonsense-mediated decay JOURNAL PLoS Genet 13 (11), e1007105 (2017) PUBMED 29161261 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1748) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 1748) AUTHORS Kessels MY, Huitema LF, Boeren S, Kranenbarg S, Schulte-Merker S, van Leeuwen JL and de Vries SC. TITLE Proteomics analysis of the zebrafish skeletal extracellular matrix JOURNAL PLoS One 9 (3), e90568 (2014) PUBMED 24608635 REMARK Publication Status: Online-Only REFERENCE 8 (bases 1 to 1748) AUTHORS Jima DD, Shah RN, Orcutt TM, Joshi D, Law JM, Litman GW, Trede NS and Yoder JA. TITLE Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity JOURNAL Mol Immunol 46 (7), 1505-1516 (2009) PUBMED 19200601 REFERENCE 9 (bases 1 to 1748) AUTHORS Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH and Talbot WS. TITLE The zebrafish gene map defines ancestral vertebrate chromosomes JOURNAL Genome Res 15 (9), 1307-1314 (2005) PUBMED 16109975 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC052113.1. On Apr 30, 2008 this sequence version replaced NM_213207.1. ##Evidence-Data-START## Transcript exon combination :: BC052113.1, BC065857.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168447, SAMEA3505370 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1748 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="13" /map="13" gene 1..1748 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /note="phospholipase A2, group XIIB" /db_xref="GeneID:406739" /db_xref="ZFIN:ZDB-GENE-040426-2771" exon 1..395 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /inference="alignment:Splign:2.1.0" misc_feature 53..55 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /note="upstream in-frame stop codon" CDS 62..757 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /EC_number="3.1.1.4" /codon_start=1 /product="group XIIB secretory phospholipase A2-like protein precursor" /protein_id="NP_998595.2" /db_xref="GeneID:406739" /db_xref="ZFIN:ZDB-GENE-040426-2771" /translation="
MFPRALPLLLLCISAGLAATLIQASVDAASVDSPAGESPDVNQENQAEHVLMADAPVEGKPAPSATEESEDDDDWGFGSIRGSLQSVNGYFDSILELMGGRDGVCQFRCRYGKAPQPRPGYQMSEPDGCSTSLLGFQFDMGVPAMTKCCNQLDICYETCGSNKYRCDTKFRWCLHSICGDLKKSLGLMSKVEACETFADTMYNTVWTLGCRPFMNGQRASCYCEGEEKDEL"
sig_peptide 62..115 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 239..754 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /note="Group XII secretory phospholipase A2 precursor (PLA2G12); Region: PLA2G12; pfam06951" /db_xref="CDD:399731" exon 396..472 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /inference="alignment:Splign:2.1.0" exon 473..638 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /inference="alignment:Splign:2.1.0" exon 639..1729 /gene="pla2g12b" /gene_synonym="wu:fb26d02; wu:fb99g06; wu:fc91d12; zgc:111897; zgc:56487; zgc:77746" /inference="alignment:Splign:2.1.0" ORIGIN
ctttttccttcgagcccttcaacttcgtcggtctccctggactgtactgtaataggacatcatgtttcctcgcgcactacccctgctcctgctgtgtatctctgcaggcttggctgcgactcttatccaggcttcagtagatgcggcttcagtagattcgcctgctggtgaaagcccagatgttaatcaggagaatcaggcagagcatgttttaatggcagatgcccctgttgagggaaaacctgcaccgagtgccacagaagaatctgaggacgatgatgactgggggttcggctctatccgaggaagtttacagtcagtcaatggctattttgactcaatactggagttgatgggaggccgtgatggtgtatgtcagttccgctgcagatatggtaaagctcctcagcctcgtcctggctatcagatgtcagaacctgatggttgtagcacgtcactgcttggcttccagtttgatatgggtgtcccagccatgaccaaatgttgcaaccagttagatatttgctacgaaacctgtggatccaacaagtaccgctgtgacaccaaattccgctggtgcctccacagcatctgcggtgacctgaagaagagtctgggccttatgtccaaagttgaagcatgtgagacctttgcagacaccatgtacaacactgtgtggactttgggctgcagacccttcatgaacggccaaagggcgtcctgctattgcgaaggagaagagaaggacgagctctgaagaccaacaaaatcacaaaacacaccaccttcagcacatataaacacttcatagctttaaactataccacacaaggcacgagtcacattcaaacaagtcacatttcactacaaacattgagtagaaactattgatcgacattaattgaagtgaaatgtgaccttcacacgttgtggagattcatccactaacccttgaactggtgctattggattttgtcagacaagaaaaagtttatatggtatatgggtgtcgttatcgcatatgtattgtgtgtgtgtgtgattgtgtataggtttcgcacacagaaatctgatatatggcaatatatgcaaatttcatatataacatacaagtttatatttgaatttcacatatagaaaaatcgatggttcattccactgtgtcaacctctaaaataaagactaagctgaagggaaatgactgaatatagaaaaatagatatccgtttatgtgtatattttaagtttcaaccattttaattacagatgtgtacattgcatatgtgtgtgtgtcatatatgaacacaaaatgattgctaatatatttgaacctatacggtatgtacatatttgtaattataatggttgtcaaactatatatgtaaacagccatttttgctacatacacttgtatgtcatataattcatttgcatatatttccgtatgtcggatttctatatgggttgttatatgggaagacaacattgaacttcttatgaccatagatgaagccattaagacgtagagaattcacacaagtatttgtaccgaactaatatttaatatattaaggaacttttgtttggtgatgatctatatatcatggtaatatttatgtaatattactgcattactattattttcttcaaatgtaactaaatgtagaatcagtgctcagcaaaaacacgcaggaatgtttttcattgtgagtaaagactgaacgaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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