2024-05-17 01:27:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001171587 3558 bp mRNA linear VRT 06-MAR-2022 DEFINITION Danio rerio prospero homeobox 3 (prox3), mRNA. ACCESSION NM_001171587 XM_687770 VERSION NM_001171587.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 3558) AUTHORS Gauvrit S, Villasenor A, Strilic B, Kitchen P, Collins MM, Marin-Juez R, Guenther S, Maischein HM, Fukuda N, Canham MA, Brickman JM, Bogue CW, Jayaraman PS and Stainier DYR. TITLE HHEX is a transcriptional regulator of the VEGFC/FLT4/PROX1 signaling axis during vascular development JOURNAL Nat Commun 9 (1), 2704 (2018) PUBMED 30006544 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3558) AUTHORS Yan H, Zhang C, Wang Z, Tu T, Duan H, Luo Y, Feng J, Liu F and Yan X. TITLE CD146 is required for VEGF-C-induced lymphatic sprouting during lymphangiogenesis JOURNAL Sci Rep 7 (1), 7442 (2017) PUBMED 28785085 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3558) AUTHORS Venero Galanternik M, Castranova D, Gore AV, Blewett NH, Jung HM, Stratman AN, Kirby MR, Iben J, Miller MF, Kawakami K, Maraia RJ and Weinstein BM. TITLE A novel perivascular cell population in the zebrafish brain JOURNAL Elife 6, e24369 (2017) PUBMED 28395729 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 3558) AUTHORS Ernens I, Lumley AI, Zhang L, Devaux Y and Wagner DR. TITLE Hypoxia inhibits lymphatic thoracic duct formation in zebrafish JOURNAL Biochem Biophys Res Commun 482 (4), 1129-1134 (2017) PUBMED 27916465 REFERENCE 5 (bases 1 to 3558) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 3558) AUTHORS Bussmann J and Schulte-Merker S. TITLE Rapid BAC selection for tol2-mediated transgenesis in zebrafish JOURNAL Development 138 (19), 4327-4332 (2011) PUBMED 21865323 REFERENCE 7 (bases 1 to 3558) AUTHORS Aranguren XL, Beerens M, Vandevelde W, Dewerchin M, Carmeliet P and Luttun A. TITLE Transcription factor COUP-TFII is indispensable for venous and lymphatic development in zebrafish and Xenopus laevis JOURNAL Biochem Biophys Res Commun 410 (1), 121-126 (2011) PUBMED 21641336 REFERENCE 8 (bases 1 to 3558) AUTHORS Tao S, Witte M, Bryson-Richardson RJ, Currie PD, Hogan BM and Schulte-Merker S. TITLE Zebrafish prox1b mutants develop a lymphatic vasculature, and prox1b does not specifically mark lymphatic endothelial cells JOURNAL PLoS One 6 (12), e28934 (2011) PUBMED 22216143 REMARK GeneRIF: conclude that Prox1b activity is not essential for embryonic lymphatic development in zebrafish REFERENCE 9 (bases 1 to 3558) AUTHORS Del Giacco L, Pistocchi A and Ghilardi A. TITLE prox1b Activity is essential in zebrafish lymphangiogenesis JOURNAL PLoS One 5 (10), e13170 (2010) PUBMED 20976189 REMARK GeneRIF: isolated a second ortholog, named prox1b, and analyzed its expression during development by whole mount in situ hybridization. We detected strong prox1b expression in the endothelium of posterior cardinal vein from where lymphatic precursors originate Erratum:[PLoS One. 2010;5(11). doi: 10.1371/annotation/6c1f2c4a-7da6-43cd-a934-78b7550dfbaf] Publication Status: Online-Only REFERENCE 10 (bases 1 to 3558) AUTHORS Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH and Talbot WS. TITLE The zebrafish gene map defines ancestral vertebrate chromosomes JOURNAL Genome Res 15 (9), 1307-1314 (2005) PUBMED 16109975 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from FJ544314.1. On Apr 26, 2010 this sequence version replaced XM_687770.3. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: FJ544314.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3558 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="7" /map="7" gene 1..3558 /gene="prox3" /gene_synonym="prox1b" /note="prospero homeobox 3" /db_xref="GeneID:564431" /db_xref="ZFIN:ZDB-GENE-050107-3" exon 1..274 /gene="prox3" /gene_synonym="prox1b" /inference="alignment:Splign:2.1.0" exon 275..1790 /gene="prox3" /gene_synonym="prox1b" /inference="alignment:Splign:2.1.0" misc_feature 279..281 /gene="prox3" /gene_synonym="prox1b" /note="upstream in-frame stop codon" CDS 309..2288 /gene="prox3" /gene_synonym="prox1b" /note="prospero-related homeobox 3; prospero-related homeobox gene 1b; prospero homeobox 1b" /codon_start=1 /product="prospero homeobox 3" /protein_id="NP_001165058.1" /db_xref="GeneID:564431" /db_xref="ZFIN:ZDB-GENE-050107-3" /translation="
MDSPSDRFHQQPSQMCPFELYRSLPDSNPSGHRFPPGSLSSHPLFSPLMHPNSMSQKWGSFRQRQGLFPGLLVDDDVSEEDVFGKREFGATSSSQRGSGERGQAPEPSDWGQDFARVKRLRMDSAARSEDESIREGKRGRKSRSSFRMDEKKGMEQGNRRESREGRKRQRQELKLQLEETRGKLLELQRKVWRVYGGQADDEKDQENGGINLDEVADMFSDSDDPLVGNGFSPQRCSSKKNNETNGNGNAGIFPETSVDLDLELNGSQVWLGCSLIRGEWESAEGGQKFAQALKQELANVVAQVIDRVVRLYAESDPEAVSSAQEPSMTMDLNSDRRPRPQAVEQVEALPLVTKSPQDKRAPVAQSGHKDLLLPQANPSLAPLAQPPLPALLPPRGKEHFLPSYPPDNPVHLPLLHYTMQNLFARSLSSLPLHKDCLSESFMDFRSHNSAFPPLPLLGQLDPSPSDRAREVGMRAGGAGMVDGADAALYLAAGSSQEGLSPCHLKKAKLMFFYTRYPSSSTLKTYFPDVKFNRCVTSQLIKWFSNFREFFYIQMERFARQAAREVLTSARERALRLGRDTELYRILNMHYNKSNDYQVPERFVEISEVALREFFTAIQSGRDADPCWKKSIYKIICKLDSPVPDSFRLPGCPTDTYRMG"
misc_feature 1800..2264 /gene="prox3" /gene_synonym="prox1b" /note="Homeo-prospero domain; Region: HPD; pfam05044" /db_xref="CDD:428277" exon 1791..1898 /gene="prox3" /gene_synonym="prox1b" /inference="alignment:Splign:2.1.0" exon 1899..2099 /gene="prox3" /gene_synonym="prox1b" /inference="alignment:Splign:2.1.0" exon 2100..3558 /gene="prox3" /gene_synonym="prox1b" /inference="alignment:Splign:2.1.0" ORIGIN
gaaagagagatagtaaaactgtgtgtgcgcgcgcacgggggcagcggacatccctccctcgcgcctcgacgcccactggctgatcaccacgcgatagagtgcgcgaggatgagagatggacagcagcgcgacacaggagacacagcaataacaggaaactcagtggcgctttcaacgctgatgctcccggtgaccagcggacacctcaaaaacaccgccatataacaccacaggaaagtgaccaagcgggggatgcgtgctgtctgactgttttatcctgaaagcagatcagaacagaaaaggaggctatggattccccttcggatcgatttcatcagcagccttcccagatgtgtcccttcgagctgtatcgcagcctgccagattccaacccctcaggccaccgatttccccccggcagcttgtcttctcatccgctcttctcccctctcatgcaccccaatagcatgtcccaaaagtggggcagtttccggcagcgtcagggcttgttccctgggcttctggtggatgatgatgtgagtgaggaggatgtctttgggaagagggagtttggggcgacctcatcatcacagcgtggttctggagaacggggacaagctcctgagccctctgactgggggcaggattttgcaagagttaagagactaagaatggactctgcagctagaagcgaagatgaatcaattagagaagggaagagagggagaaagagtagatcttcatttaggatggatgagaagaaaggaatggagcaaggcaacaggagggaaagcagggaaggaaggaagcggcagcggcaagaactaaagctccagctggaggaaaccagagggaaacttcttgaacttcagcgcaaggtgtggagggtgtacggagggcaggcggacgatgagaaggatcaagaaaacggaggaatcaatctggatgaggttgctgatatgttttctgacagcgacgatccacttgtaggcaatggattttctcctcaacgttgttcgtctaagaaaaacaatgaaaccaatggaaatggcaatgctggaatttttccagagacctctgtggacctggacctggagttaaacggcagtcaagtgtggctgggatgcagtttgatcaggggcgagtgggagagcgcagagggagggcagaagtttgctcaagcgttgaagcaggagcttgccaatgttgtcgctcaggttattgacagagttgttcgtctctatgctgaaagtgaccccgaggcagtctcatccgcccaggaacccagcatgacgatggatctaaactcagacaggaggccgagacctcaagctgtagagcaggtagaagctttgccactcgtcacaaagagtcctcaagacaagagggcccctgtcgctcaaagtgggcacaaggacctcctcctccctcaagccaatcctagcctcgctccgctagcccagccgcctctcccggcacttttaccccccaggggcaaggagcatttcctgccctcttatcccccagacaaccctgtccacctgccccttcttcactacaccatgcagaatctctttgcccgctccctctccagtctgcctcttcataaggactgcctgtctgaatctttcatggacttccgttcccacaactctgcgttcccacccctcccgctgctgggccagctcgacccctctccatcagatagagcaagggaagtgggcatgagggcaggtggtgcgggaatggtggatggtgcagatgcagcactctatcttgctgcaggttcatctcaggagggcctttctccgtgccacttgaagaaagccaagctcatgttcttctacacgcgctaccccagctccagcacactgaagacatatttccctgacgtcaagttcaatcgctgtgtcacttcccagctgattaagtggttcagtaacttccgggagttcttctatatccagatggagcgttttgcccggcaggcagccagagaggtgcttacatctgccagagaaagggctctccgcctgggcagagacaccgagctttaccgcattctcaacatgcactacaataagagcaatgattaccaggttccagagaggtttgtggagatatctgaagtggccctgagggagtttttcaccgccatccagagcggtcgggatgctgatccatgctggaagaagtccatctataagatcatctgtaaattagacagtccagtgcccgacagcttccggctgcccggatgccccacggatacttaccggatgggttaaagagagtttatctaccacacaggagggccagcagttaaaatagagggctttattgttgctcacttattgctggttctggaggtatttgtcctattaatttttcccaaacaaaagtctttgtcgaagggttataagtgattagttcactcaaaaacgacagtttactctccatttactccccctcaagtagttctaaaagctttatgagttttggttttattctgaacacaaaagaagatattttgaagaaagctgaaaacatcatttgacatccatagtagaaaaatcagatagtatgaaagtcaatggttaccagcttttttcaatatatcttcttataaacagatgtggaagaagtgaagggagaataaaggacgacagaattttcagttttgggtgaactttcactttaaccaaaccagcaatctgctagatgaatcgttgcacaacaataagcacttcaattagaagcgaagcgtacaaaaatcctagattgaatactatgaattaataagggaaagaactgcaaatatgcgaagcacagcaaattatacaatccaactgacaattaggagaaaactattgatttgaaggagaaaactattgatttgaatttggttgtatttatagcaactatatatttcaagtttgttgatgtgggcgaagatatatctgctttgcttcactttgctcgctgcaactctctgattggtggaactttttttgtacagcattataggtattgtagtttttctgccaggtattgccagttctgctatagaccatgatcgttttacagatgaattatgtattaattaatgtgaacagatgggttcagctaaagcacatacagtcagcgaacaacctcagagctcacaacaggtctgtcttaaaaggtttatcaattattgctagaaatcagtttccctatggagaaaatgaatggaattaaaactggtagaacttcaatattgcactctatcattgacagtggaggaaaatgtacaaaatagtgcagtgaatattatcatcatgatgctcaaaggtattactcattttagtccagttagcactgaaaacgcatctgattatatggaaaagagtttctcattttgtcagctgttacattaatgctcaataattgatctggaaatgcaggcctggttggctttcagactttttttatatatagatattacttgttaatcatgataatgttgctgagttttctgtgaacctgtggtatggtgtaataaaaatatgtaaaaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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