2024-05-17 01:11:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001080058 2330 bp mRNA linear VRT 26-JUN-2021 DEFINITION Danio rerio POU class 4 homeobox 4 (pou4f4), mRNA. ACCESSION NM_001080058 XM_695754 VERSION NM_001080058.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 2330) AUTHORS Weger BD, Weger M, Gorling B, Schink A, Gobet C, Keime C, Poschet G, Jost B, Krone N, Hell R, Gachon F, Luy B and Dickmeis T. TITLE Extensive Regulation of Diurnal Transcription and Metabolism by Glucocorticoids JOURNAL PLoS Genet 12 (12), e1006512 (2016) PUBMED 27941970 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC128835.1. On Mar 11, 2007 this sequence version replaced XM_695754.2. ##Evidence-Data-START## Transcript exon combination :: BC128835.1, EH583998.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2330 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="21" /map="21" gene 1..2330 /gene="pou4f4" /gene_synonym="zgc:158291" /note="POU class 4 homeobox 4" /db_xref="GeneID:572084" /db_xref="ZFIN:ZDB-GENE-061215-70" exon 1..285 /gene="pou4f4" /gene_synonym="zgc:158291" /inference="alignment:Splign:2.1.0" misc_feature 94..96 /gene="pou4f4" /gene_synonym="zgc:158291" /note="upstream in-frame stop codon" CDS 166..1197 /gene="pou4f4" /gene_synonym="zgc:158291" /codon_start=1 /product="Brain-specific homeobox/POU domain protein 3-like" /protein_id="NP_001073527.1" /db_xref="GeneID:572084" /db_xref="ZFIN:ZDB-GENE-061215-70" /translation="
MMSMNSKQPFSMHPILHEPKYTPLHSSSEAIRRACLPTPSLQGNIFAGFDETLLQRAEALAAVDIVAQKSHPFKPDATYHTMTTMTSMTCTPTSSSGHLHHPSVLTSHHHHPHHQPTQGLEGDLLDHLPGISIGGMPGSDVCSTASHPHSHMSAINHMQHHHPQSMNMHPHGLGSHASLGGVGDSEPDPRELESFAERFKQRRIKLGVTQADVGSALANLKIPGVGCLSQSTICRFESLTLSHNNMVALKPILEAWLEEAERAQREKMAKPEIFNGGDKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATH"
misc_feature 715..948 /gene="pou4f4" /gene_synonym="zgc:158291" /note="Found in Pit-Oct-Unc transcription factors; Region: POU; smart00352" /db_xref="CDD:197673" misc_feature order(1003..1017,1021..1023,1072..1074,1090..1092, 1129..1131,1135..1140,1147..1152,1156..1164,1168..1173) /gene="pou4f4" /gene_synonym="zgc:158291" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 1009..1170 /gene="pou4f4" /gene_synonym="zgc:158291" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(1009..1011,1018..1020,1138..1140,1147..1152, 1159..1161) /gene="pou4f4" /gene_synonym="zgc:158291" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 286..2313 /gene="pou4f4" /gene_synonym="zgc:158291" /inference="alignment:Splign:2.1.0" ORIGIN
ctcgcgcctggctacagctcagagccagtgaagaagacttctctggcataccttttcactttttatcatccagatcgtccctgggttccgaggtagatactgttctggaacaaaacggagataaacgaggaagacgagaagccaccctttctcacctctgccataatgatgtccatgaatagcaaacagccgtttagtatgcatccgattttgcacgagcctaaatacacacctctccattccagctcggaggctattaggcgagcatgtttgcccacgccctcgctgcagggtaacatctttgccggctttgatgagaccctgcttcagagagccgaggcgctggcggcggtggacatcgtcgcgcaaaaaagtcatccgttcaaaccagatgccacctaccacaccatgaccaccatgacaagcatgacctgcacgcccacgtcctcctccggacacctacatcatccgtcagtgttgacctctcaccaccatcatccccaccaccagccaacccagggcctggagggcgacctgcttgaccacctccccggcatctctatcggaggcatgccgggctccgacgtttgctccacggcttcccacccgcattcgcacatgtccgctatcaaccacatgcagcatcaccacccgcaaagcatgaacatgcacccccacggcctgggctcgcacgcctctctgggcggcgttggagactccgagcccgacccccgggagctggagtctttcgccgagcgcttcaagcagaggcggatcaaactcggggtcacgcaggccgacgtgggctcggcgttagccaaccttaaaatccccggggtcggctgcctgagccagagtactatctgtcggtttgagtctctcactttgtcccacaataacatggtggccctcaagcccattctggaagcatggttagaggaggcagaacgggctcagagggagaaaatggccaagccggagatttttaacggcggggacaaaaagagaaaacgcacttcgatcgccgctccagaaaagcggtcgctggaggcttactttgccgtccagcccagaccctcgtcggagaaaatcgctgccatcgccgagaaactggacctgaaaaaaaacgtggtccgcgtgtggttttgtaatcaaaggcaaaagcagaaacgcatgaagttttcggccacgcactaggcccgaataatgtattaaaaacaaactcaaataatcagacacacgagtgaacagagacgacaaaactcttcgaggctgaggcgaaacgcttcccacgcaggaacaggagctgggcgtcaacatcccagagacagaagtgctccaaaagtttgtcgtaacaaaacatgtcgagaacaactcgctctggaagacggaggacgagaggaaaattaacaccaactaaacgttgcaattattgtacaaaacgagaattgaataataatgattattctcctaactttaaaacaactcttttatattcatctgtgtacatacctgtgaatacactgcacctctttgtgtgaagaacgcatcaaaattctgttttttaaaggacgaaaagaaagcaagctaaaacgctgttgtgcaaaagatgttccattctagaaaacttagtgttgttctatatgctccagaagaaaatcatgaaggttctgttgtgacccattgcatggtttacaaggcgttaagtgttcatttattgtttggagttttcattcgttttgatgtattgcaataagagagaacacgcacaggcgaacgcacgtacacacggacatacttaatatacttttctgtgtctacctcatgattcctgacgtcttgacacattcatggtcatattggaaatagggcgtaaatctagttttcagttgacacattttgggtaaaattagataggaagcacgaagcgttgtgtgttgcaactaatttcacttcaacaaagctttgacaatcaaattaagaattattttgtgactagccccttctactgtatgtctccgcttaaattattattattattattattattattattattattattattacactaagtttgtagatgggaacatttcattttatgttcagagattcattgcactttgtagatatgattgcgactccttatttgttttgcctatttatattctttcttgattcgttgattttgtttacttatttatttgagcttaatttattttcaatatcacacatgtttcatttgtgaaagtgtgcttaactgtgtctgtgtacgcgacagaaatttcaataaaccatgcacgtcttacctcaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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