2024-05-17 02:25:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001025532 810 bp mRNA linear VRT 29-MAY-2023 DEFINITION Danio rerio ladybird homeobox 1a (lbx1a), mRNA. ACCESSION NM_001025532 XM_687459 VERSION NM_001025532.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 810) AUTHORS Wang J, Thomas HR, Thompson RG, Waldrep SC, Fogerty J, Song P, Li Z, Ma Y, Santra P, Hoover JD, Yeo NC, Drummond IA, Yoder BK, Amack JD, Perkins B and Parant JM. TITLE Variable phenotypes and penetrance between and within different zebrafish ciliary transition zone mutants JOURNAL Dis Model Mech 15 (12) (2022) PUBMED 36533556 REFERENCE 2 (bases 1 to 810) AUTHORS Nord H, Kahsay A, Dennhag N, Pedrosa Domellof F and von Hofsten J. TITLE Genetic compensation between Pax3 and Pax7 in zebrafish appendicular muscle formation JOURNAL Dev Dyn 251 (9), 1423-1438 (2022) PUBMED 34435397 REFERENCE 3 (bases 1 to 810) AUTHORS Juarez-Morales JL, Weierud F, England SJ, Demby C, Santos N, Grieb G, Mazan S and Lewis KE. TITLE Evolution of lbx spinal cord expression and function JOURNAL Evol Dev 23 (5), 404-422 (2021) PUBMED 34411410 REFERENCE 4 (bases 1 to 810) AUTHORS Talbot JC, Teets EM, Ratnayake D, Duy PQ, Currie PD and Amacher SL. TITLE Muscle precursor cell movements in zebrafish are dynamic and require Six family genes JOURNAL Development 146 (10) (2019) PUBMED 31023879 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 810) AUTHORS Masselink W, Masaki M, Sieiro D, Marcelle C and Currie PD. TITLE Phosphorylation of Lbx1 controls lateral myoblast migration into the limb JOURNAL Dev Biol 430 (2), 302-309 (2017) PUBMED 28843494 REFERENCE 6 (bases 1 to 810) AUTHORS Jovelin R, Yan YL, He X, Catchen J, Amores A, Canestro C, Yokoi H and Postlethwait JH. TITLE Evolution of developmental regulation in the vertebrate FgfD subfamily JOURNAL J Exp Zool B Mol Dev Evol 314 (1), 33-56 (2010) PUBMED 19562753 REFERENCE 7 (bases 1 to 810) AUTHORS Sabo MC, Nath K and Elinson RP. TITLE Lbx1 expression and frog limb development JOURNAL Dev Genes Evol 219 (11-12), 609-612 (2009) PUBMED 20091319 REFERENCE 8 (bases 1 to 810) AUTHORS Wotton KR, Weierud FK, Juarez-Morales JL, Alvares LE, Dietrich S and Lewis KE. TITLE Conservation of gene linkage in dispersed vertebrate NK homeobox clusters JOURNAL Dev Genes Evol 219 (9-10), 481-496 (2009) PUBMED 20112453 REFERENCE 9 (bases 1 to 810) AUTHORS Ochi H and Westerfield M. TITLE Lbx2 regulates formation of myofibrils JOURNAL BMC Dev Biol 9, 13 (2009) PUBMED 19216761 REMARK Publication Status: Online-Only REFERENCE 10 (bases 1 to 810) AUTHORS Wotton KR, Weierud FK, Dietrich S and Lewis KE. TITLE Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates JOURNAL BMC Evol Biol 8, 171 (2008) PUBMED 18541024 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AL928816.2. On Jul 16, 2005 this sequence version replaced XM_687459.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA3505370, SAMEA3505371 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..810 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="13" /map="13" gene 1..810 /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /note="ladybird homeobox 1a" /db_xref="GeneID:564103" /db_xref="ZFIN:ZDB-GENE-040724-40" CDS 1..810 /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /note="ladybird homeobox 1b" /codon_start=1 /product="transcription factor LBX1a" /protein_id="NP_001020703.1" /db_xref="GeneID:564103" /db_xref="ZFIN:ZDB-GENE-040724-40" /translation="
MTSKEDAKGASVEDRRRSPLDHLPPPANSNKPLTPFSIEDILNKPSVKRSYTICGTAHLLSSGEKHPSTGHPLSNRALLTQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTLFGQRNTPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKAVGNVPFEKMAKLADLEKRVNGTLGDSSAVSPSRSNHEHEGTNKLHMSPSSPYTDHTTSKECSEDEDEEIDVDD"
misc_feature order(376..390,394..396,445..447,463..465,502..504, 508..513,520..525,529..537,541..546) /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 382..543 /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(382..384,391..393,511..513,520..525,532..534) /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..325 /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /inference="alignment:Splign:2.1.0" exon 326..810 /gene="lbx1a" /gene_synonym="dZ265N4.1; lbx1b; si:busm1-265n4.1; si:ch211-103o12.1" /inference="alignment:Splign:2.1.0" ORIGIN
atgacctccaaagaagacgcgaaaggcgcctcggttgaggaccgaaggcgcagtccgttggaccatcttcctccacctgctaactcaaacaaacctctcactccgttcagcatagaggatattttgaacaagccgtctgtcaaacgaagttacacaatttgcggcacggcgcacctgctttcttccggtgagaagcatccgtccacgggccatcccctctccaaccgtgcgctgctcacccagacatctccactgtgcgccctggaggagctcgccagcaaaaccttcaaggggctggaagtcagtgtcttacaagcggcagaagggagagacggcatgacactcttcggtcagaggaatacccctaaaaaacggagaaagtcgagaacagctttcaccaatcaccaaatctacgaacttgagaagagatttctctatcagaaatatctgtctccggctgatcgagatcagatcgctcagcagctcgggctcacgaatgctcaagtcatcacctggttccagaatcgccgagccaaactcaaaagagacctagaggagatgaaggcggacgtggagtcggccaaagcggtgggcaatgtaccttttgagaaaatggccaaactggcagacctagagaaacgtgtgaacggtacactcggagattcatcggccgtgtctccgtcacgatctaatcacgagcacgagggcaccaacaaactccacatgtcaccatcatcgccatatacagaccacacaacgagcaaagagtgttcagaagacgaagacgaggaaattgatgtagatgactga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]