2024-05-05 01:11:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_059223325 4863 bp mRNA linear INV 30-AUG-2023 DEFINITION PREDICTED: Tigriopus californicus copper-transporting ATPase 1-like (LOC131877609), transcript variant X1, mRNA. ACCESSION XM_059223325 VERSION XM_059223325.1 DBLINK BioProject: PRJNA1009447 KEYWORDS RefSeq. SOURCE Tigriopus californicus ORGANISM Tigriopus californicus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Harpacticoida; Harpacticidae; Tigriopus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081442) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_007210705.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/25/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4863 /organism="Tigriopus californicus" /mol_type="mRNA" /strain="San Diego" /isolation_source="water" /db_xref="taxon:6832" /chromosome="3" /country="USA: Ocean Beach, San Diego, California" /lat_lon="32.75 N 117.25 W" /collection_date="2012" gene 1..4863 /gene="LOC131877609" /note="copper-transporting ATPase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:131877609" CDS 372..4670 /gene="LOC131877609" /codon_start=1 /product="copper-transporting ATPase 1-like isoform X1" /protein_id="XP_059079308.1" /db_xref="GeneID:131877609" /translation="
MWSEAHLRVSGMTCGKCERLIREAVQAISAEGIQSVHVSKDDGQVRFRWDPSDPKVDQDQVVAAIQALVNGKFKVTQYIPDMEAHLATLPLIDVMASPKASRTNLISVSHSEPLLGDFGEDDLEDTRHSEPLPDQKRQCTVQILGMTCQSCVKNIETTIAQKSGIDGVKVDLPGQRGQFDYNPKLTSPDLIVSQISDMGFEASLDFGPSSSPQTGLIRVEGMTCQSCVKNIQAEIGQVRGVNSIHVDLDEKLATVEFDAPLNVDILAESISDMGFDTLALQSEDIGIEGMTCLSCVKTIQDGLVDTPGVYYVKVDLDAHMGHFTFDPQTISVPQISEAVEEMGFKTQVRPGAADRGTKPKSKVNTDLQVPESEETKSINMDYEKCFLRVQGMTCASCVVAIEKHVKKLRGVHNILVALMAAKAEIDYDPAQILPQQIANSITDLGFSSEIIENERGSGEVELEIKGMTCSSCVHLIESTLLKKEGILNATVALATQRGKFKFNQSSLGPRDVIKMIEDLGFEANLYSRGIDTSANYLSHQAEIRKWRNSFLISLVFGLPCMIIMMYFMVKMSSPDHEHGDGCCIVPGLSLENLLLFLLSTPVQFVGGRHFYIAAIKAIRHGTTNMDVLVMLATTVSYAYSVAVVIASMAMQEGTSPMTFFDTPPMLLLFISLGRWLEHIAKAKTSDALSKLMGLKATEAIIVQVDNGMNVLNERKENVDLVHRGDILKVVPGAKIPVDGKVVFGKSLCDESLITGESMPVSKSEGSLVIGGSINQNNMILIKATHIGEDTALSQIVRLVEEAQTSKAPIQQLADKIAGYFVPIVVTCSLLTLSVWVVIGYVDNSLLPVSNMERDGFSPPEITWQFGFRMALTVLAIACPCSLGLATPTAVMVGTGVGATNGILIKGAEPLENAHKVSTVVFDKTGTITHGKPSVASLSVFVEERYLSLVRILAIVGAAESCSEHPLASSIVQYVKTTFGCDIRAKFSHFEAVPGCGLRVTVSNVDGMVEDAKNSAALKSFQNQRGAPSVHHLPTTLNSAMVDYSSMRPSANMIRGSLEQERTPNLVDVDVDGVSAIALTEHHVLIGNRKWISEKNFIQIPDDIENKLVAQEQLGRTALLAAIDGVLVGLFGIADTVKPEAHLTVYTLKKMGLEVVLLTGDNKKTAAAIARQAGISRVFAEVLPSHKVSTIKRLQRGGHKVAMVGDGVNDSPALAQADIGIAIGTGTDVAVEAADVVLIRDDLLDVVACLQLSKKTVHRIWLNFLFASVYNLVGIPVAAGVFSPLGIKLQPWMGSGAMALSSVSVVTSSLLLRLYKKPTTTQLETVEYLKVLHSRNQGPLEEGPLSIHRGDDDYIFKPTSRSSLSRLLHFNTPSVSEQSQNDHRQRDRNHVDGSGRHLLGNHPNEEDNQYLDDVKIVNSSRSPGRSPHSMTSL"
polyA_site 4863 /gene="LOC131877609" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgtgtgtgtacttgatgtatgtgagtagctgctgggcgaaaggctatcgagcgaatgacaactcgcaggaacgacgtctggcgagctcgtaaaggtcgtatcgatgtgaaaacataaagaaacaccccaaagtgatgaagtgaagtgtgattccatcatcgatccgacgtgtcgccgaagagggcatttcgctgcatcagccatctcgcattctcgagaggccactaccatagtgcaactagtgctctaatcatcaggtattcgctccatcaccatcatcatcatcatatcaggaggaaaggattgaatcttagcattgcattcaaagtcatgtttggctaaaccgagtcttggccaattgaagatcagccatgtggtcggaggcccacctgcgggtgtccggcatgacttgcggcaagtgtgaacggctgattcgcgaagccgttcaagcgatatcggccgaaggcatccaatccgttcacgtgtccaaggatgacgggcaggtccggtttaggtgggatccaagtgatcccaaggtggaccaagaccaagtggtggccgccatccaggccttggtcaacggcaagttcaaagtgacccagtacatcccggacatggaggcccatctggcgacgttgccgttgatcgacgttatggcatcaccaaaagcttccaggacaaatctcattagcgtgtcacattccgaacctcttcttggggattttggtgaggatgacctggaggacacgcggcattcagaacccttacccgatcaaaagcgacaatgcaccgttcaaatcttgggcatgacctgtcaatcctgtgtgaagaacatcgaaaccaccatcgctcaaaagtccggaatcgatggagtcaaggttgatttgcccgggcaacgaggtcagtttgactacaatccgaagctgacctcgccggatttgattgtgtcacaaatctctgacatgggatttgaagcatccttagattttggcccaagttcctccccacaaacaggcctgattcgggtggagggtatgacttgccaatcctgtgtcaagaatatccaggcggaaatcggccaagtccggggtgtgaattcgattcacgtggacttggacgagaaattggccacagttgaatttgatgctcctttgaatgttgacatcctagctgagagcatctctgatatgggattcgacaccctagccttgcaatccgaggatattggaatcgaggggatgacttgtctttcttgtgtgaaaaccattcaagacggcctcgtcgatacgcctggtgtctattatgtgaaagtcgatttagacgctcacatgggacatttcacctttgatccccaaacgattagtgtgcctcagatatccgaggctgtggaagaaatgggtttcaagacgcaagtgaggcctggagctgccgatcgtgggactaaaccgaaatcaaaagtcaacaccgacctccaagtacctgaaagcgaggagaccaaatccatcaacatggattacgaaaagtgttttcttcgcgttcaaggcatgacttgtgccagttgtgtggttgccattgaaaagcatgtcaagaagctccgaggtgtccataacattctggtggctttgatggcggccaaggctgagatcgattatgatccagctcagattctcccgcagcagattgccaactccataacggatttgggattctcatctgagattattgagaacgagcgtggatccggagaagtggaactggagatcaaaggcatgacttgctcatcgtgtgtccatttgatcgaatccacgttactcaagaaagagggaatcttgaacgccactgtggctttggccacgcaacgagggaagttcaagttcaatcaaagctccctgggtccccgagatgttatcaaaatgattgaagacttgggatttgaagccaacctctactctcgtgggattgacacatcggcaaattacttaagccaccaggctgagattcgtaaatggaggaactcatttctcatctcgttggtgttcggactcccttgcatgattatcatgatgtacttcatggtcaagatgtccagtcccgaccacgagcacggagatggttgctgcatcgttcctggcctttccttggagaatcttctcctgttcttactttccacaccagtccaattcgttggaggacgccatttctacatcgctgcgatcaaggccattcgtcatggaaccacgaacatggatgtcctcgtgatgttggccaccacggtgtcttacgcatattctgtcgcagtggtgattgcctccatggccatgcaagaaggaacatcgcccatgactttcttcgacacaccgccaatgttattgcttttcatctctttgggtcgatggctcgagcatattgctaaggccaaaacatcagatgccttgtccaaattgatgggcttgaaggccacggaagccatcattgtccaagtggataacggcatgaatgtacttaatgagagaaaagagaatgtagatctggttcatcgaggagacatcctgaaagtggtccctggagcaaagattcctgtggatgggaaagtggtctttggcaagtccctttgtgacgaaagtctcatcacgggcgaatccatgcccgtgtccaaatcagagggctccctggttattgggggctcaatcaatcaaaacaatatgattctaatcaaagctacccatattggtgaagacaccgctctcagtcagatcgttcgtctagtcgaagaggcccaaactagcaaagcgcccattcaacaactggcggataagattgccggctacttcgtacctatcgtggtcacgtgttccttactcactctctccgtttgggtggtgatcggttatgtggacaacagcctattgcccgtatccaatatggaacgtgatgggttttcgcctcccgagatcacttggcaatttggcttccgaatggcactcactgtgttggctattgcctgtccttgctccctgggtctagccacacccactgcagtcatggtgggaacgggggtgggtgctaccaatggaatactcatcaaaggagctgagccgctagaaaatgctcacaaagtgtccaccgtggtcttcgacaagaccggaaccataactcatggcaaacccagtgttgccagtttgtcagtgtttgttgaggagcgttacttaagtttggtcagaattctggctattgtgggtgcggctgagagttgctcagagcatccattggcctcgtccatagtgcaatatgtgaaaactacctttggatgtgacatccgagccaagtttagtcatttcgaagctgtgcctggatgtggacttagagtgaccgtctccaatgtcgacggcatggtagaagatgccaagaactcggcggccttaaaatcgtttcaaaaccagagaggcgctccatctgtccatcaccttcccaccactttaaattctgccatggttgactattcgagtatgcgacccagtgccaatatgattcgcggttccctggaacaagagcgaacccccaacttggttgatgtggacgtggatggagtgtcagcgattgccttaaccgagcaccacgtgctcatcgggaacagaaaatggataagcgagaagaatttcatacaaattccagatgatattgagaacaaactggtggctcaagagcaactgggtcggacggccctcttggcggccattgacggcgtgttggtgggtctattcggcattgcagacactgtcaaacccgaagcgcatttgacagtgtacaccctcaagaagatgggccttgaggtcgtccttctcacgggagacaacaagaaaacagcggcggccattgccagacaagcaggcatttcaagggtatttgccgaggtccttccctctcataaggtctcaaccattaagcggcttcaacgaggaggccacaaggtggctatggtcggtgatggtgtcaatgattctccagccttggcccaggccgacatcggaatcgctatagggactggcacggatgtggctgtggaggcggccgatgtggttctcatccgggacgatctgcttgacgttgtggcttgtttgcagctctccaagaagaccgtccaccggatttggctgaatttcctgttcgcctccgtttacaatttagtagggatccccgtggctgccggggtattttccccattgggcatcaaacttcaaccttggatgggatcaggagccatggccttgagctcagtgtccgtggtcacgtcctctcttctattgaggttatacaaaaagcccaccacaactcaattggaaaccgtcgaatacttgaaggtccttcactcgaggaaccaaggtcccttggaggaaggacctctttctattcatcgtggggacgatgattacatcttcaaaccgaccagcagatcatccttatccagacttcttcattttaacaccccttccgtgtcagaacagtcccaaaacgaccaccgccaacgagatcggaaccacgtggatggcagtggaaggcatctcttgggcaaccatcccaacgaggaggacaatcaatatttggacgatgtcaaaattgtcaactcaagccgctctccggggaggagtccgcactcgatgacttcactttagagctagttagctagctaacttcatccattgtcccatggtttataccactttgttgacattgtattatacagccaaaggaataaccagccattcgcacgttcaaagcttgcgacgctttgttcccggaatcaatgcacccatgaaaatcaaagatcactcggaacatgaataaattttcacatgaattttccga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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