LOCUS       XM_059006681            1566 bp    mRNA    linear   VRT 18-AUG-2023
DEFINITION  PREDICTED: Acipenser ruthenus homeobox protein Hox-B8a-like
            (LOC131696460), transcript variant X4, mRNA.
ACCESSION   XM_059006681
VERSION     XM_059006681.1
DBLINK      BioProject: PRJNA1003472
KEYWORDS    RefSeq.
SOURCE      Acipenser ruthenus (sterlet)
  ORGANISM  Acipenser ruthenus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae;
            Acipenser.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081221) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_902713425.1-RS_2023_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/10/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Acipenser ruthenus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7906"
                     /chromosome="33"
     gene            1..1566
                     /gene="LOC131696460"
                     /note="homeobox protein Hox-B8a-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 16
                     Proteins"
                     /db_xref="GeneID:131696460"
     CDS             243..782
                     /gene="LOC131696460"
                     /codon_start=1
                     /product="homeobox protein Hox-B8a-like isoform X3"
                     /protein_id="XP_058862664.1"
                     /db_xref="GeneID:131696460"
                     /translation="

MRDLNSCAVACHGEPGNFYGYDALQRQALFGTQDSDLIQYSDCKLASSIGEDAEVTEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSCKSEQEEIEKEKQGRDKGEGEEAESEPRTEDKAKQG"

     misc_feature    order(474..488,492..494,543..545,561..563,600..602,
                     606..611,618..623,627..635,639..644)
                     /gene="LOC131696460"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(480..482,489..491,609..611,618..623,630..632)
                     /gene="LOC131696460"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    483..641
                     /gene="LOC131696460"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     polyA_site      1566
                     /gene="LOC131696460"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ctcctcctctccctctccctttctcatttttttctcccactttttcactctctcaatctctccatattcacatccacacagttctgtgagcccgtgaggagactgcaaagccaatgggacgagggtccggtaatagacgcaaattatcatgaaaagacactgcaaaatatgatacaactcatttgaggcggagtaaatcacagaaaccagcttatgaagtggcaccccttctcggaaatgtgatgcgggatcttaattcctgcgccgtggcctgtcacggggagccgggcaatttctatggatacgacgccctgcagagacaggcactcttcggaacccaggattctgatttgatccaatacagcgactgcaaactcgcctccagcatcggagaagacgcggaagtcaccgagcagagcccctctcccacgcagctctttccgtggatgagaccgcaagcagctgccggacggaggcgaggcaggcaaacatacagccgctaccaaacgctggaactggagaaagaatttttgttcaacccgtatctgacgcgcaagcggcggattgaggtatcgcacgccctgggactcactgaaaggcaggtcaaaatctggttccagaacaggagaatgaaatggaagaaggagaacaacaaagacaaatttcccagttgcaaatccgagcaagaggagatcgagaaagagaaacaaggaagggacaagggcgaaggcgaggaggcggaatcggagccccgcaccgaggacaaagcgaaacaaggataagatagaaacaaataatatacggccagcaagcaaacattataccgaactatactgaaacattacaacccttaatactttgttccttgtgtaaatgatggagaaaaaaatgggaaaaaaagaattattgaattaaaacaagacaccgcttttagagattgtcgtgtgatctaaaaagaaacggaaaaaaacagaactctgtgagacattctaccagatgttgaaatatgttgtattgtaaacagtagctctctccgttattcatgtgcaacttttttttgtacgattaatagaatgtttgttattagcaattgcatccggcagctgtaggtttgtttattaagttaaacggtgcacttttttttcttttaaaataaaaacagtttttttttcatgaatgttattgtaataataacgtatagcaaataatggaattaatcccaacaacatgaaactgcctaattatggtgtatatgttatcactgtttaattgttttattttactgtgtcatgattattataaaaaaaatttttttggtctgttttaattaatgatgttttgtgttgttttttttggtttggtttccagtaagcatgcgcacagtgcaaactaatgaagacgatgtaaagtgatcctccgtttactgtgaaacaaaatgtatactgtactcgtgaattactttctaggcacttagtgaaatattttgttgttcttcgctactttgttcaattgtctaaacctggaagcggcggaagaaagagatacaataaagtttacaagcaagaa

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