LOCUS       XM_058376060            1604 bp    mRNA    linear   VRT 23-JUL-2023
DEFINITION  PREDICTED: Hemibagrus wyckioides homeobox protein Hox-B8a
            (LOC131344086), transcript variant X2, mRNA.
ACCESSION   XM_058376060
VERSION     XM_058376060.1
DBLINK      BioProject: PRJNA996633
KEYWORDS    RefSeq.
SOURCE      Hemibagrus wyckioides
  ORGANISM  Hemibagrus wyckioides
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Bagridae; Hemibagrus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_080711) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_019097595.1-RS_2023_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/20/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Hemibagrus wyckioides"
                     /mol_type="mRNA"
                     /isolate="EC202008001"
                     /db_xref="taxon:337641"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="sexual maturity"
                     /linkage_group="LG02"
     gene            1..1604
                     /gene="LOC131344086"
                     /note="homeobox protein Hox-B8a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 42
                     Proteins"
                     /db_xref="GeneID:131344086"
     CDS             1..738
                     /gene="LOC131344086"
                     /codon_start=1
                     /product="homeobox protein Hox-B8a isoform X2"
                     /protein_id="XP_058232043.1"
                     /db_xref="GeneID:131344086"
                     /translation="

MSSYFVNSLFSKYKSGDTLRPNYYECGFAQDLGTRPTVVYGPGTGATFQHAPQIQEFYHHGASTLSAAPYQQSPCAVTCHGEPGNFYGYDALQRQTLFSAQDTDLVQYSDCKLASGGIGDETDNTEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKSEQEAIEKEKRDKEQATGAQSAKEDCEKSKQI"

     misc_feature    order(436..450,454..456,505..507,523..525,562..564,
                     568..573,580..585,589..597,601..606)
                     /gene="LOC131344086"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(442..444,451..453,571..573,580..585,592..594)
                     /gene="LOC131344086"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    445..603
                     /gene="LOC131344086"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     polyA_site      1604
                     /gene="LOC131344086"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atgagctcctattttgtcaactccctcttctccaaatacaaaagtggtgacacgttacgccctaattattacgagtgcggttttgcgcaggacctggggactagacccaccgtcgtgtacggtccaggcacaggagcaactttccagcatgccccacagattcaggagttttaccaccacggcgcgtctacgctctcggctgcaccttaccagcaaagtccatgtgccgtaacctgccatggcgaacctggcaacttttatggctacgatgctctccaaaggcaaacacttttcagtgcccaggacaccgacttggtccaatatagcgattgcaaactcgcctcgggaggcatcggcgacgagacggacaacacggagcagagtccttctcctacgcagctgtttccgtggatgcgaccacaagctgctggacgcagacgaggtcgccagacctacagccgctaccagacacttgagctggagaaagagttcctcttcaatccgtatctgacacgcaaacggcgcattgaggtgtcgcatgccttaggactgactgaacggcaggtcaagatctggtttcaaaacagacgtatgaaatggaaaaaagaaaacaacaaggacaagtttcctagtagtaagtctgaacaggaggcaattgaaaaggagaagcgggataaggaacaggcgactggagcacagtcagcaaaagaagactgcgagaagtcgaaacaaatataggacggatgtcgagagcagacagagcaatcaggagcgcaagcgcgcgagcacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattcttacatacatacacttaaaaaggacatcgtggggcgaagacaaaacagtttggaaagtttctctatagatttcagtctacgatgagtagatagaaatagctggtcaaatagatgagcggtcatggagagaaagaactctaaatctgcgtgatcatcgaactttattgtgacgaaagacatgaagcatttctaccttttcctaatgttcagagagtaggcctattatagtgtgtaaattagcctccctacttcgtggaataaatattgtgaaaacttggtttctgttgttagatttttgacattaaccttatctcggcagctgtatagttcttaagttaaatggtgcacttttaactcttgtcacttatatgttatgctgacgtatcgactaatgacatccaacaacatgaaactgcctatttatgccgtagcatatctttttacacttactaagtttctttcaaactgatgagattttgttatcttcctttcctgggttaagcatgcgcacagtggaagaaatgaatgaaaaggaaataaaaaggatgtaatgtgacccattgtttactgtgagacagatttttgtactgtatttgtgcatttgttcatggaaacttggcaatatgctttcattgttcttcactttgttctatggactaaaccttgaaaaagacaaataaagtgggcacaataaagtttacaggcgagaatcgat

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