2024-05-19 11:55:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_058057802 3430 bp mRNA linear VRT 06-JUL-2023 DEFINITION PREDICTED: Doryrhamphus excisus placenta-specific protein 9-like (LOC131107602), transcript variant X2, mRNA. ACCESSION XM_058057802 VERSION XM_058057802.1 DBLINK BioProject: PRJNA990801 KEYWORDS RefSeq. SOURCE Doryrhamphus excisus (bluestripe pipefish) ORGANISM Doryrhamphus excisus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Doryrhamphus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080467) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030265055.1-RS_2023_07 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 07/03/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3430 /organism="Doryrhamphus excisus" /mol_type="mRNA" /isolate="RoL2022-K1" /isolation_source="wild-caught" /db_xref="taxon:161450" /chromosome="2" /sex="male" /tissue_type="brain and eyes" /dev_stage="adult" /country="Kenya" gene 1..3430 /gene="LOC131107602" /note="placenta-specific protein 9-like; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:131107602" CDS 92..364 /gene="LOC131107602" /codon_start=1 /product="placenta-specific protein 9-like isoform X2" /protein_id="XP_057913785.1" /db_xref="GeneID:131107602" /translation="
MKIYVMGERKGKAEESERTPRSVSSSACQEHASLHSRLDVVEKEVEDTVGKLEAELDALLKDIQDPKWRPLLDKTGTPVDILEDPASVRS"
misc_feature 164..>295 /gene="LOC131107602" /note="Placenta-specific protein 9; Region: PLAC9; pfam15205" /db_xref="CDD:434536" ORIGIN
gatagatgcagacttagggtttatctaaggagcagtgatccgcagactcaacccaacaggggggacaattgtgaactgttgtggatcagaaatgaagatctacgtgatgggggagcggaaagggaaagcagaagaatccgagcggacacctcgttcggtttcttcaagtgcatgtcaggaacatgcaagtcttcacagtcgtctggatgtggtggaaaaggaagtggaggacactgttggcaaattggaagctgagctggatgccctcctgaaggacatccaagacccaaagtggcgccctctgctggacaagaccggaactcccgtagacatcctggaggacccagctagtgtccggtcttaaatcttaaataaaagttcaaagcttttcaccttagaagagttaaaagtcgcacgcttgtatactcatctctcattaaggagttaaacgactcaaacgacttcaagacggagttttattcctgtatgaaagcaataaagcagcatgttttgaacacacaagcagttccataaagtttacagtacgatgcttttcactaaacccttcactgtgggatgggatggaagaaaggagtcacgtgacttgcgtgtcttcacctccattttaacaggacaaaaacgacacttttgcatactcggaaaaggtcgaaaagggaatcgaccggaatagaaggcatgcttttgctggtcaaatacgagcacacggccttggagaaacactttagagcatcccatacgtgaacacatcaaacggacaaggtcaacaaggtcaacaaggtcagcaagcaatgtcaaatgaagagttatgaaataatagcaagctacaaattcaaatctaaatcagttattagtcaggcgtacggtatatttgtgtgcatgaacgtggccgatactttattccagtaagtcaatgagccttgatacttcattaaagcaataatatgtactacgtatactatagttaaattaccataacagtgtttctctaatagccaacatcagggccattaaaatatcagtggaatatttatggaaatttagcttggagaaaaagttctattaaggcagggagtactttcaatgttacagcagccctgccaacgtgtacacatttattgtactcgacattgagaaccccctcattaaggtccaaaaattactggaataaaagcataatttgttacgagaagaaaatgaaaatgaaatgacagaaacagcggcagttttatgaaaataaagtcaaaatattaatggaaaaaagtcacaaaaatgtgagtaatgtcataattttatgtggaaaaataaaatttttaatttaatgttttcattttaatttacatttaagtagcataaaattaaaatgttaaaaaatatgtttttttaaaacttgtaatatgaacaaaataaagttttattttttggaaaaattaggttggggaaaatattgtgggaataaagtcataatgttatgacaatttacaaaatagaaaaaataaacaagtcatattcaagtgagaaaacagttgcaattttgtgagaacaatgtttaagcggtaatattatgagagaaaaataaataaaataaaataaaattgtgttagcactagcatcgatgttaacattgcagcttatgctcatttctggcacttttccgggaaacccgattagcattgtaacaacgtctcaatgttagagtagccctgccaacgtgtacacatttattgtactcgacattgagaaccctcgcattaaggaagtaaggtccaaatattactggaataaaagcataatatattacgagaagaaaatggaaatgaaatgaaagaaacagctgcttttttatgagaataaagtcaaaatattaatagaaaaaaaatcatattctaacacaaaaatgtgagtaatgtcataattttatgtggaaaaataaaaattttaatttaatgttttaatttaaatttaagtagcataaagttaaaatgtttaaaaaatatatgtttttttttaaaaccccttcatgacgggagtaaggtccaaatattactggaataaaagcataacacattacgagaagaaaatggaaatgaaatgaaagaaacagctgtaatttcatgagaataaagtcaagatattaatagaaaaaaattcatattctaacacaaaaatgtgagtaatgtcataattttatgtggaaaaataatataatctaagcagtataaagttaaaatataaaaaatatgtttttttaacttgtaatatgaacaaaataaagttttatttttggaaaaattaggttgtgttgggttatgagaaacaaatgaaataaaataaaataaaaattgtgttagcactagcattaatgttaacattgcagcttgggcgacctatatattatgctaatttctggcacttttccggaatacacgattacccgattagcattataacaacttttataggtcagtaaagtgtaaaaagcataataggtctcctttatactttatacttatacttataccttataatctgtcatgtttataccaaaatattatgctataatgttacatcttcctccctgggctcgtagtgggagccccgcagcaaatgatgcaaatatgaatgctatattaacattagaatgatcataaaccacctacaggatgcccgaaggtaattaatttcatacaacaatatcatgccgtttacgtaataccagatttatataacgttcatagagaatcccacactgcatgaacaatgaaatatgatatcatcggtcgcttgttcatgcaccaatcaagcttatactgaaaaatgttacacatgcaaacaaagaagatgatagaaacaggaaatggaagtgatttggaagatgctaccttttcaggaattctttccatccaaacatttgaaataaacaattcaacattccggataacagaacacaaacttatcgtatctttcgctgcaagttaaggttgacagaaaacaaataaaagtacagtggtaaaaaacataagtaattacatttttaacaatattagagccctccagacataaaataacacccctatagtcacttttactctcgtattacccaatatagtagacatatgagaaaaaaaagccatttaagacataagtaagacttgtgtcaacgcgtgttgctgtaaatgagttccggtgtttgtaaacaggaagtgacgtttgacgcttcagagtggacttttcgcttggtgtgggttacggcctcaacagtagggttaatcgtagggattattgtggtctgttgtgagatcaatcaaaacctgcaataaaatcctgttgttgcggggcgatcaattctggtgcttgtgtgtctcgcccaacattacagtcacattactgacacctagtggaccagtgtaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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