2024-05-04 20:18:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_055542240 6603 bp mRNA linear MAM 25-APR-2023 DEFINITION PREDICTED: Bubalus carabanensis ATPase copper transporting beta (ATP7B), transcript variant X2, mRNA. ACCESSION XM_055542240 VERSION XM_055542240.1 DBLINK BioProject: PRJNA956113 KEYWORDS RefSeq. SOURCE Bubalus carabanensis (carabao) ORGANISM Bubalus carabanensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_073635) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_029407905.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/20/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6603 /organism="Bubalus carabanensis" /mol_type="mRNA" /isolate="K-KA32" /db_xref="taxon:346063" /chromosome="12" /sex="female" /tissue_type="blood" /dev_stage="heifer" /ecotype="Philippines" /collection_date="2021-10-28" /collected_by="Philippine Carabao Center" /breed="swamp buffalo" gene 1..6603 /gene="ATP7B" /note="ATPase copper transporting beta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:129624395" CDS 410..4678 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X2" /protein_id="XP_055398215.1" /db_xref="GeneID:129624395" /translation="
MKPEEERPITDREKASRRILSKLSQPAMKQSFAFDNNGYEDDLDGMCPSQTATGTISIVGMTCQSCVKSIEGRVSSLKGIVSIKVSLEQGSTEVRYVPSVVSLMQICHQIEDMGFQASVAEGKATSWPSRVSPASEAVVKLRVEGMTCQSCVSSIEGKIGKLQGVVRVRVSLSSQEAVITYQPYLIQPQDLRGHITDMGFEAVIKNKVAPMSLGPIDVRRLQSTLSAAPPAPVNQNDNNSETPGGQGVPLHLRVDGMHCKSCVLNIEDNIGRLPGVQSIHVSLESRTARVQYDPSLVSPGALRRAIEALPPGNFKVSLPNGAEGSGPDSRSPPASSVPCTMMLAIAGMTCKSCVQSIEGLISQRAGVHQISVFLAEGTAVVLYDPSRTHPEELRAAVEDMGFEASILAENCSSNHIGNHSSGSAMGHAAAGAPLPMQGGTPQPGELHTNHIPRQSPKSLPASTTVAPKKCFLQISGMTCASCVSNIERNLQKEPGILSVLVSLMAGKAEVKYNLEAIQPLEIAKLIQDLGFEAAVMEDYTGSDGDLELMITGMTCASCVHNIESKLRRTEGITYASVALATSKAHVKFDPEIIGPRDIVKLIEEIGFRASLAQRIPNTHHLDHKVEIKQWKNSFLCSLVFGIPVMGLMIYMLIPSQEPQSTVLDHNVIPGLSILNLIFFILCTFVQFLGGWYFYVQAYKSLRHRMANMDVLIVLATSVAYIYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHVVKSKTSEALAKLMSLQATEATVVTLGEDNVIIREEQVPMELVQRGDIIKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSMVIAGSMNAHGSVLITATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTVTLVVWIGIGFIDFGVVQKYFPVPSKGISQAEVVLRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITQGVPKVSRVLLLVDVATLPLRKVLAVVGTAEASSEHPLGVAVTRYCKEELGTETLGCCTDFQAVPGCGISCKVSSVESILAQDAATQTFSVLIGNREWMRRNGLTVTSDVLDAMTDHETKGQTAILVAIDGVLCGMIAIADSVKQEAALAVHTLKSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNQGKRVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSRRTVWRIRLNLVLALIYNLIGIPVAAGVFIPIGVVLQPWMGSAAMAASSVSVVLSSLQLKCYRKPDLARYEAQAHGSMKPLSASQVSVRVGMDDRRRDSPRASAWDQVSYVSQVSLSPLKSDKLSRHSGAADDRGDKWSLLLNDRDEEQGI"
polyA_site 6603 /gene="ATP7B" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccgaagccccggctccggcgccccggcccctattctagagccccgctgccggtcggaaaccaatgggaggctcttgcgcttctgggatcgattttccaggtgcggagttcacaaccgcagcagctgcagcgtttctgatccgcggagccctggagtcaggcgcggagcccagagggagctgcgcagagcggacccgacggtgacccccgccacgccgcaccttccaggccggcagtgggcgagcctggggatctgcatctccggcccgggtctacgcggctcgccctggctccttctctcccttggcacacgcccaaggctgaagacagaccgaggccagagcgcaccggtccaggaggtgaccttgggctccgggctgaatcacagaagaaattagttcctccgcgagatgaagccagaggaggagagaccgattacagaccgcgaaaaggccagtcggagaatcctgtctaagctctcccagccagcgatgaagcagagctttgcctttgacaacaatggctacgaggatgacctggatggcatgtgcccctcccagacggccactggcaccatcagcatcgtgggcatgacctgccagtcgtgtgtcaagtccatcgagggcagggtctccagtttgaaaggcattgtgagcattaaggtttccctggagcagggcagcactgaggtgaggtacgtgccctcagtggtaagcctgatgcagatttgccatcagattgaagacatgggcttccaggccagtgtggccgagggaaaggccacctcctggccctccagggtctcacccgcctcggaggctgtggtcaaacttcgggtggagggcatgacctgccagtcctgtgtcagctccatagaaggcaagatcgggaaactgcagggtgtcgtgagggtccgcgtctcgctcagcagccaggaggcagtcatcacttaccagccttaccttatccaaccccaagacctcaggggccacataactgacatgggctttgaagctgtcatcaagaacaaagtggcccccatgagcctgggacccatagacgtcaggcggctccaaagcaccctctcagcagcccctccggctcccgttaatcagaatgacaataactctgagaccccgggtggccagggggtccccctgcacctgagagtggacggaatgcactgtaagtcttgtgtcctgaacattgaagacaacattggccggctccccggggttcagagtattcacgtgtccctggagagcaggactgcccgagtccagtacgatccttctctcgtctccccgggggccctgcggagggccattgaggccctgcctcctgggaactttaaagtctctcttcccaatggggcggaagggagtgggccagactccaggagccccccagcgtccagtgtgccctgtaccatgatgctggccattgccggcatgacctgcaagtcctgcgtccagtccatcgaaggcctgatctcccagagggcgggtgtgcaccagatctcagtctttttggccgaagggactgcagtggttctgtacgatccatctcgaactcacccagaagaactgcgagctgcagtggaggatatgggattcgaggcctccatcctggctgaaaactgttccagcaaccacattggcaaccacagctctgggagtgccatggggcacgcggcagctggcgcacctctgcccatgcagggagggactccccagccaggggagctccatactaatcacatcccccgccagtcgcccaagtccctgccggcctccaccacggtggccccaaagaagtgcttcctacagatctcaggcatgacctgtgcgtcctgtgtgtccaacatagagaggaacctgcagaaagaacctggtatcctgtccgtgctggtttccctgatggcgggaaaggcagaggtaaagtacaacctggaagccatccagcccctggagatagcgaagctcatccaggacctgggctttgaggcagcagtgatggaagactacacgggctcggatggtgacctcgagctgatgatcacggggatgacctgtgcctcctgtgttcacaacatagaatccaaactcaggaggacagaaggcatcacctacgcctctgtggctctcgccaccagcaaagcccacgtgaagtttgatcctgaaattattggtccgcgggatattgttaaactcatcgaggaaattggctttcgtgcctccctggcccagaggatccccaacactcatcacttggaccacaaggtggaaataaagcagtggaagaactctttcctgtgcagcctggtgtttggcatccccgtcatgggtttaatgatctatatgctgatacccagccaggagccccagtcgacggtcctggaccacaatgtcatcccaggactgtccatcctgaatctcatcttctttatcttgtgcacctttgtccagttcctcggtggctggtacttctatgtccaggcctacaaatctctgagacacaggatggccaacatggacgtgctcatcgtgctggccacgagcgtcgcctacatctactccctcgtcatcctggtggtggccgtggccgagaaggccgagaggagccccgtgaccttctttgacacgccccccatgctcttcgtcttcattgccctggggcggtggctggaacacgtggtgaagagcaaaacctcagaagcgcttgccaaactcatgtctctgcaagccacggaagccaccgtcgtgacccttggtgaagacaacgtgatcatcagggaggagcaggtgcccatggagctggtgcaacgaggtgacatcatcaaggtggtccccgggggcaagtttcccgtggacgggaaagtcctagaaggcaacaccatggccgacgagtccctcatcacaggagaggccatgcccgtcaccaagaagcccggaagcatggtaatcgctgggtccatgaacgcccatggctctgtgctcatcactgccacccacgtgggcaatgataccaccttggcccagattgtgaagctagtggaagaggcccagatgtccaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatttcaactgtgacgttggtggtatggattggtatcggttttatcgattttggtgttgttcagaaatactttcctgtccccagcaagggtatctcccaggcagaggtggtcctgcggttcgcgttccagacgtccatcacggtgctctgcatcgcctgcccctgctcgctgggcctggccacgcccacggccgtcatggtgggcaccggggtggccgcccagaacggcatcctcatcaaaggaggcaagcccctggagatggcccacaagataaagaccgtgatgttcgacaaaaccggcaccattacccaaggggtccccaaagtctcgcgagtcctcctgctcgtggacgtggccacgctgcccctgcggaaggtgctcgctgtggtggggaccgcagaggccagcagcgagcaccccctgggcgtggcagtcaccagatactgtaaagaggaactcggcacggagaccctcgggtgctgcacagacttccaggcagtgcccggctgtggaatcagctgcaaagtcagcagcgtggagagcatcctcgcccaagacgcggccacacagaccttctctgtgctgatcggaaaccgggaatggatgaggcgcaacggcctgaccgtcaccagcgacgtccttgacgccatgaccgaccatgagacgaagggccagacggccatcctggtggccatcgatggtgtgctgtgcggtatgatcgccatcgcggactcggtcaagcaggaggccgccctggctgtgcacacgctgaagagcatgggcgtggacgtggtgctcatcaccggggacaaccgcaagacagccagggccatcgccacccaggtcggcatcaacaaagtctttgcagaggtgctgccttctcacaaggtggccaaggtccaggagctgcagaaccaggggaagagagtggccatggtgggtgacggcgtgaacgactccccagccctggcgcaggctgacgtgggcattgccatcggcacgggcactgacgtggccatcgaggcggccgacgtcgtcctcatcaggaatgacctgctcgatgtggtggccagcattcacctctccaggaggaccgtctggagaatacggctcaacctggtgctggcgctgatctacaacctgatcgggatccccgtcgcggcaggtgtcttcatacccattggtgtcgtgctgcagccatggatgggctcggcggccatggcggcctcctccgtgtccgtggtcctctcgtcactgcagctcaagtgctacaggaagccggacctggcgcggtacgaggcgcaggcgcacggcagcatgaagcccctgagcgcgtcccaggtcagcgtgcgcgtcggcatggacgaccgccggcgtgactccccgcgggcctcggcctgggaccaggtcagctacgtcagccaggtgtccctgtcgcccctcaagtccgacaagctgtcccggcacagcggcgcggccgacgacaggggcgacaagtggtctctgctcctgaatgaccgggacgaggagcagggtatctgaaagccgcccccgtggctgaggctcccagccagccgcggcagcagcaggcggccgagcccctccaggcctgggcgaatattctggatcaccctttccctgtgcccagggggcgcgattccccgggtcccacaggctcgggggaaggcgtgcttgctcacgctcgtgggctcatcggacaccttgctgtggcctcaagaagaggagggacgagccctcctcgcatcccctgccttagcacttgtgacacgaccagtctcatcgggtctaacatcttcgctgcgcccctccacagagctcataaaaacttaggggtctggctctttctgacagcacccccgtgcatcgcgaacctgagaccaccgtgtacctcaggcgcccccttgtttctgctggggccctctcttcctcctctgcccttgatggtgggggtgtgacaccctgtcatctgagggcagggctgatatcgtcactttccctctgctgctctccaaggggctcctgtgctcctgcctgaacccctgcccacacgacaaccagagagcctgccacgcttctcctcggagaccagacgtcttggttgcccgcgagccgcttcgccctagagtcccggcttctcacgctcaatccagtgtggttgctgactgtcgctgcctagctgggctgagggtctgagagcctgaggcttgagaaatttggcttcctgtggggtcctgggggaggcacgtggctcaagatcctgcttgcctggtttcaagggttttggttgcatggcctgtggtgtgacagtcccctcacagggtctggtatggggttcaggtctgtgctccccagagccatgcagcccaagtaagaggacaccccagccctccacaagcttcgactcctgcacatggagctggtgccttaggaagggggtgcccaccactcccaagggaactgtttctaacttcagtgaccgttatggttgcaggataatcaaagcaacagcaatgagcctgtggcagaccccaagcttggtggtgattggcagagcctgtaggagtctgcaaatactagccaaaccttagactgagtagagcctgttctcagtttcaagggggaagcccttatcgcacacactttagttatttattgtcagttattttttagggggatataagcactttttatcgcttacctctaatactcacaatgaactagcgaagtagatacaatattgtccacatttcgcaggcgggaaacaggctcagagaggctaggaatcccaccaaggatcacacagccagtgtgcacgccagagcagggatctgaattcacatccgcgggccctgaagtcttttctttaatttggctttaccgtcaatattttgtttgataagaagcaacaaggaaaagtcccttgttcctggaagaacaaagctgccaggtgacgtattcactgaactggcttgaaatgtgactggaaggtcatgtcacattgccttcggatagctccttcccatttgcatataattgagtctgtgcagcgtcttgtcctttaaaatccgtatgcagggtggaggtgtggtttgtttccagtcttccttccccagccctgtcctgcttctgttctcagttgtgtcctttctctgttcccagctgctgctcagggaatgtttcctgtttccatacaagaggctaatcatctaaagaatccaattgtgatcagtttttcaaaaagcttttaggaccctaaatgttatgtgtatagggacatggagatatttatataattgtacagaagataaccttttagatgttcaaaaagtgtcaggaatgttttgttgttgttgttcgtttttttggtcaggaaagaagaattcctatttcaaaaacattccatgctatatttagaataaaatttcatttttttattcatctaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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