2024-05-04 17:50:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_055335855 4775 bp mRNA linear MAM 20-APR-2023 DEFINITION PREDICTED: Nyctereutes procyonoides ATPase copper transporting beta (ATP7B), transcript variant X6, mRNA. ACCESSION XM_055335855 VERSION XM_055335855.1 DBLINK BioProject: PRJNA955236 KEYWORDS RefSeq. SOURCE Nyctereutes procyonoides (raccoon dog) ORGANISM Nyctereutes procyonoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Nyctereutes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026575121) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_905146905.1-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/13/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4775 /organism="Nyctereutes procyonoides" /mol_type="mRNA" /isolate="TBG_1078" /db_xref="taxon:34880" /chromosome="Unknown" gene 1..4775 /gene="ATP7B" /note="ATPase copper transporting beta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:129516424" CDS 126..4424 /gene="ATP7B" /codon_start=1 /product="copper-transporting ATPase 2 isoform X6" /protein_id="XP_055191830.1" /db_xref="GeneID:129516424" /translation="
MKQSFAFDNVGYEGGLDSVCPPQTATSTISILGMTCQSCVRSIEGRISSLKGIVSIKVSLEQGNATVKYMPSILSLPQVCRHIEDMGFEASVAEGKAASWPSRSSPGLEAVVRLRVEGMTCQSCVSSIEGKLGKLQGVARVRVSLSTQEAVITYQPYLIQPQDLRDHVNDMGFEAVIKNRGAPVSLGPIDIGRLQRTNPKMPLTSDNQNLNNSETLGHQGSHLVTLQLRVDGMHCQSCVLNIEENIGQFPGVQNVQVSLENRTAQVQYDPSCVTAGALQRAIEALPPGNFKVSLPAAAAGSETGNRFSACAAPAPAPRTPALGRCDTVMLAIAGMTCASCVQSIEGLISQREGVQQISVSLAEGTAVVLYDPSIIGPEELRAAVEEMGFETSVLSENGYSNHVGNHSSGNSSAHTTAGVPVSVQEGAPHTEGLPGNHSPGRPSRSPPASTPVAAQKCFLQITGMTCASCVSNIERKLQKEAGVVSVLVALMAGKAEVKYHPDVIQPLEIAQLIQDLGFEATVLEDYVGSDGDLELIITGMTCASCVHNIESKLTRMAGITYASVALATSKAHVKFDPEIIGPRDIVKVIEEIGFHASPAQRNPSAHHLDHKVEIKQWKKSFLCSLVFGIPVMGLMIYMLVPSSTPHESMVLDHNVIPGLSILNLIFFILCTFVQLLGGWYFYVQAYRSLRHRAANMDVLIVLATSIAYTYSLVILVVAVAESAERSPVTFFDTPPMLFVFIALGRWLEHIAKSKTSEALAKLMSLQATEATVVTLGEDNLILREEQVPMELVQRGDVIKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSMNAHGSVLVTATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTLTLVVWIIIGFIDFGVVQKYFPTPNKHISEAEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPKVMRVLLLVDVATLPLRKVLAVVGTAEASSEHPLGMAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSSVESILAPGERQRSKQAAPPGTVGGVPEETDETPQTFSVLIGNREWMRRNGLTISSDVSDAMADHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLKSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKKVAMVGDGVNDSPALAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVWRIRLNLVLALIYNLVGIPIAAGVFMPIGVVLQPWMGSAAMAASSVSVVLSSLQLKCYKKPDLERYEAQAQGRMKPLTASQVSVHIGMDDRRWDSPRATPWDQVSRVSQVSLSSLKSDKLSRHSAAADDGGDTWSLLLNDRDVEQCI"
polyA_site 4775 /gene="ATP7B" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gttcagcaaacatttattgaagtcactgtgtttcaggcatggtgttgaagagctgaaaataccgtggttaccaaaaaaagatcctgtctaaactttctttgcccactcgtgcctgggaaccagtgatgaagcagagcttcgcctttgacaatgtcggctacgaaggtggcctggacagtgtgtgccctcctcagacggccaccagcaccatcagcattctgggtatgacctgccagtcgtgtgtaaggtccatcgagggcaggatctccagtttgaaaggcatcgtgagcattaaggtttccctggaacaaggcaatgcgactgtgaagtacatgccgtccattctgagcctgccgcaggtttgccgtcacattgaggacatgggcttcgaggccagcgttgcagaaggaaaggctgcctcctggccctcgaggtcctcgcctggcctcgaggctgtggtcagacttcgggtagagggcatgacctgccagtcctgtgtcagctccatcgaaggcaagctcggaaagctgcaaggggtagcaagagtccgggtctccctcagcacccaggaggcagtcatcacttaccagccttatcttattcaaccccaggacctcagggaccatgtaaacgacatggggtttgaagctgtcatcaagaacagaggggcacccgtaagcctgggacccattgatattgggcggttacagaggaccaacccaaagatgcctttgacttctgataaccagaatctcaataactctgagaccttgggccatcaagggagccatctggttaccctgcagctgagagtcgacggaatgcactgtcagtcttgtgtcctgaacattgaagagaatataggccaattccccggggttcagaatgtacaagtgtccttggagaacagaacggcccaagtacagtatgacccttcttgtgtcactgcaggggccctgcagagggccattgaagctctcccaccagggaactttaaagtttctcttcctgcagcagcagcaggaagtgagacaggtaacaggttttctgcatgtgccgcccccgcccccgccccgagaacccccgcactgggcaggtgcgatactgtgatgctcgccatcgcgggcatgacctgtgcctcctgcgtccagtccatcgaaggcctgatctcccagagggaaggggtgcagcaaatatctgtctctctggctgaagggaccgcagtggtgctctatgatccctctataattggcccggaagaactccgagctgccgtcgaggagatgggatttgagacttcagtcctctctgaaaacggttacagcaaccatgttggaaaccacagttcggggaattcctcggcgcacaccacagccggcgtacctgtgtctgtgcaggaaggggctcctcacactgaggggctccctggaaaccacagccctggccgcccgtccaggtccccaccagcctctacccctgtggcagcacagaagtgttttttacagatcacaggcatgacctgtgcatcctgtgtgtccaacatagagagaaagctgcagaaagaagcaggcgtcgtctcagtgctggttgccctgatggccggaaaggcagaggtgaagtatcacccagacgtcatccagccactggagatcgctcagctcatccaggacctaggctttgaggcgacggtgctggaagactacgtgggctccgatggcgacctggagctgatcatcacggggatgacctgcgcgtcctgtgttcacaacatagagtccaaactcacgaggatggccggcatcacctatgcctctgtggccctcgccaccagcaaagcccacgtgaagttcgatcctgaaatcatcggtccgcgagatattgtcaaagttatcgaggaaatcggctttcatgcttccccggcccagagaaaccccagcgcgcatcacttggatcacaaggtggaaataaagcagtggaagaagtcttttctgtgcagcctggtgttcggcatccctgtgatgggtctgatgatctacatgttggtgcccagcagcacgccccacgagtccatggtcctggaccacaacgtcattccaggactgtccattctgaatctcatcttcttcatcctgtgtacctttgtccagctccttggcgggtggtacttctacgtccaggcctacaggtctctgaggcacagggcggccaacatggacgtgctcatcgtgctggccacgagcatcgcctacacctactcgctcgtcatcctggtggtggccgtggctgagagcgcggagaggagccctgtgaccttcttcgacaccccccccatgctctttgtgttcattgccctggggcggtggctggaacacatagcaaagagcaaaacctcagaagcccttgccaaactcatgtctctccaagccacggaagccaccgttgtgaccctcggcgaggacaacttgatcctcagagaggagcaggtacccatggagctggtgcagcggggcgatgtcatcaaggtggtccccgggggaaagttcccggtggatgggaaagtcctggagggcaatacgatggccgatgagtccctcatcacaggagaagccatgcccgtcacgaagaaacccgggagcacagtgatcgccggatccatgaatgcacatggctctgtgctcgttaccgccacccacgtgggcaacgataccacgttggctcagatcgtgaagttggtagaagaggctcagatgtcaaaggcacccattcagcaactggctgaccggtttagtggatattttgtcccatttatcatcatcatttcaacgttgacgttggtggtatggattataatcggttttatcgattttggtgttgttcagaaatactttcctacccccaacaagcatatctccgaggcggaggtgatcatccggtttgcgttccagacgtccatcacggtgctgtgcatcgcctgcccctgctccctgggcttggccacccccacggcggtcatggtgggcactggggtggccgcccagaatggcattctcatcaaaggaggcaagcctctggagatggcccacaagataaagactgtgatgtttgacaaaactggcaccattacccacggagtccccaaagtcatgagggtcctcctgctggtggatgtggccacgctgcccctcaggaaggtcctcgccgtggtggggaccgcggaggccagcagcgagcaccccctgggcatggccgtcaccaagtactgtaaagaggaactgggaacggagaccttgggatactgcacggacttccaggcagtgccaggctgcgggattggctgcaaagtcagtagcgtggagagcatcctggcccccggcgagcgccagcggagcaaacaggccgctcccccgggcacggttggcggcgttcccgaggaaacagatgagacgccccagaccttttccgtgctgattgggaaccgtgaatggatgaggcgcaacggcctgaccatatccagcgacgtcagtgacgcgatggcggaccatgagatgaaaggccagacggccatcctggtggccatcgatggtgtgctgtgcgggatgatcgccatcgccgatgccgtcaagcaggaggcagccctggctgtgcacacactcaagagcatgggcgtggacgtggtcctgatcacaggggacaaccgcaagacggccagagccattgccacccaggttggcatcaacaaggtctttgcagaggtgctcccgtctcacaaggtagccaaggtccaggaactccagaacgaagggaagaaagtcgccatggtgggagacggggttaatgactccccagccttggcccaggccgacgtgggcattgccatcgggacaggcacagatgttgccatcgaggctgctgacgtcgtcctcatcagaaacgatctgctggatgtggtggccagcattcacctctccaagaggaccgtgtggaggatacgcctcaacctggtgctggcactgatctataacctggtcgggatacccattgcggcaggggtcttcatgcccatcggcgtcgtgctgcagccgtggatgggctcggcggctatggcggcctcctccgtgtctgtggtgctctcatcgctgcagctcaagtgctataagaagcccgacctggagaggtacgaggcccaggcgcagggccgcatgaagcccctgacggcgtcccaggtcagcgtgcacattggcatggatgaccggcggtgggactccccgcgggccacgccctgggaccaggtgagccgcgtcagccaggtgtctctgtcctccctgaagtccgacaagctgtcccgacacagcgccgcggccgacgacggcggggacacgtggtctctgctgctgaacgaccgcgacgtggagcagtgcatctgagcgctgcaggcgggcgcgacccgctcccggctccccggctccccggctcctcggctcctcggaggagcggcccagctgtccgcagggaggaggcggggctcctggcctggcccgcgccccccgggtccccgcccggccacccgcgctgtgggcgtgggcctgcccccaccgctggacccacggggcccggacggcccgccccccgctttagcgcttgcggtgaccacttgtgagatgatctcatcgggaccaaaaacctcgctgggccttgccttaggacccccaggagcctcgcgttgggttcttcctgacgccacagtttacctcaaatacacccactgatctctgcga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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