LOCUS       XM_053771424            1796 bp    mRNA    linear   INV 23-FEB-2023
DEFINITION  PREDICTED: Cherax quadricarinatus uncharacterized LOC128684994
            (LOC128684994), mRNA.
ACCESSION   XM_053771424
VERSION     XM_053771424.1
DBLINK      BioProject: PRJNA923327
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cherax quadricarinatus
  ORGANISM  Cherax quadricarinatus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda;
            Pleocyemata; Astacidea; Parastacoidea; Parastacidae; Cherax.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_069400) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_026875155.1-RS_2023_01
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 01/17/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 46% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-508               JAPQEV010000002.1  15328105-15328612   c
            509-966             JAPQEV010000002.1  15319689-15320146   c
            967-1065            JAPQEV010000002.1  15317292-15317390   c
            1066-1107           JAPQEV010000002.1  15317089-15317130   c
            1108-1108           "N"                1-1
            1109-1177           JAPQEV010000002.1  15317020-15317088   c
            1178-1368           JAPQEV010000002.1  15316320-15316510   c
            1369-1796           JAPQEV010000002.1  15313397-15313824   c
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Cherax quadricarinatus"
                     /mol_type="mRNA"
                     /isolate="HC-2022"
                     /db_xref="taxon:27406"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="muscle"
     gene            1..1796
                     /gene="LOC128684994"
                     /note="uncharacterized LOC128684994; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins"
                     /db_xref="GeneID:128684994"
     CDS             1..1785
                     /gene="LOC128684994"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC128684994"
                     /protein_id="XP_053627399.1"
                     /db_xref="GeneID:128684994"
                     /translation="

MVVADQLWYVAEQYWYVADPVWYVARAATGTLQVSMVRCKSVTGTLQETATGTLQEPATGTLQEPATGTLQEPATGTLQEPATGTLQEPATGTLQEPATGTLQDPATGTLQEPATGTLQEPATGTLQEPATGTLQEPGTLQEPATGTLQEPATGTLQEPGTGTLQEPATDLLSGSLELEQGSRGNTSCHSLISIYLRSTVVVMKKRKALLKTVLCVSVGLLLVISSEVTRNTVTWLRSAAEFVNINFHDSRFQKSDSGWTEGGRGRWAGRVGGRESWEPHLCPHYKVKEEPESQVKLTWAPPTADTIFFAQTSCSTFLTAREACAVESAAHHHPQLPVLVLMSACVIDHAHPLMQVLTGMSNVRLAWLDXDQVFTEEPLRTWHHDRLWVMSEGRASAVVSDAVRVELLRRYGGTYLDLDLITLRPLPSSNNWLAREHINLLNGAVMSFTPQHQFLQMVVADIPAVYDPFMCCSIGPDLLTQTLHRLCPHNVTIPASVSSDQLEICGDITVWPNKLFYPIPYGYKQYQLESIFTEGAGLGQTFFNSTMAICLHLCHSITHKSANVSLAGDSILKEAAVRNCPRVVKALKKLNLHL"

     misc_feature    160..501
                     /gene="LOC128684994"
                     /note="Cornifin (SPRR) family; Region: Cornifin;
                     pfam02389"
                     /db_xref="CDD:280537"
     misc_feature    961..1308
                     /gene="LOC128684994"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; Region: Gly_transf_sug; cl19952"
                     /db_xref="CDD:418730"
     misc_feature    1339..1761
                     /gene="LOC128684994"
                     /note="Alpha 1,4-glycosyltransferase conserved region;
                     Region: Gb3_synth; pfam04572"
                     /db_xref="CDD:428017"
ORIGIN      

atggtcgttgcagatcagctctggtacgttgcagagcagtactggtacgttgcagatccagtttggtacgttgcaagagcagctactggtacgttgcaagtcagtatggtacgttgcaagtcagtgactggtacgttgcaagagacagctactggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagatccagctactggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagagccaggtacgttgcaagagccagctactggtacgttgcaagagccagctactggtacgttgcaagagccaggtactggtacgttgcaagagccagctactgatctgttgtctggaagcctggagttggagcaaggtagtcgtggaaacacgagctgccactcactgatatctatatacctcaggagtacagttgtggtcatgaagaagcgaaaagcactgctgaagaccgtgttatgtgttagcgtaggactgctgttggtgatcagtagtgaagtaacacgtaacactgtgacatggttaaggtcagcagctgaattcgtcaatattaatttccacgactcgaggtttcagaaaagcgactcaggatggactgagggtgggcgtgggaggtgggcgggcagggtgggtgggcgtgaatcgtgggagcctcatctgtgtcctcactacaaggtgaaggaagagccagagtctcaggtgaagctcacctgggctccacctacggcagacaccatcttcttcgcacagacttcctgcagcaccttcctcacagccagagaggcttgtgctgtggagagcgccgcccaccaccacccacaactcccagtccttgttcttatgagcgcctgtgtcatcgaccacgcccacccactcatgcaggtgttgacaggtatgagcaacgtgagactggcttggctggacntggatcaggtgtttactgaggaacctctgaggacctggcatcatgaccgtctgtgggtgatgagtgagggtcgcgcgtcagcggtggtgagcgacgcagtgcgggtggagttactacgtaggtacggtggaacctatttggacctggacctgatcactctccgcccgctgccctcctccaacaactggctggccagggaacacatcaacctcctcaacggtgccgtgatgagcttcactccgcaacaccagtttctacagatggttgttgcagacatccctgctgtgtatgatccctttatgtgctgcagcatcggtcctgatctcctaactcagaccctacaccgtctttgtcctcacaacgtcaccatcccagcctccgtcagttctgaccagctggagatctgtggcgacatcactgtgtggccaaataaattattttacccgatcccttacggatacaagcagtaccagttagagagcatcttcaccgaaggtgcaggactaggtcaaactttctttaacagtaccatggccatttgcctgcatctctgtcactctattacccacaagtcagcaaatgttagccttgctggtgactccattttaaaggaagccgctgtcaggaattgtcctcgtgtagtgaaggctctcaaaaaacttaatttacatctgtagtgaatggcatc

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