LOCUS       XM_053433808            2789 bp    mRNA    linear   VRT 12-MAR-2023
DEFINITION  PREDICTED: Pleuronectes platessa dicer 1, ribonuclease type III
            (dicer1), transcript variant X4, mRNA.
ACCESSION   XM_053433808
VERSION     XM_053433808.1
DBLINK      BioProject: PRJNA929487
KEYWORDS    RefSeq.
SOURCE      Pleuronectes platessa (European plaice)
  ORGANISM  Pleuronectes platessa
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei;
            Pleuronectidae; Pleuronectes.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_070636) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_947347685.1-RS_2023_03
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 03/11/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Pleuronectes platessa"
                     /mol_type="mRNA"
                     /db_xref="taxon:8262"
                     /chromosome="11"
     gene            1..2789
                     /gene="dicer1"
                     /note="dicer 1, ribonuclease type III; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins"
                     /db_xref="GeneID:128450392"
     CDS             284..2638
                     /gene="dicer1"
                     /codon_start=1
                     /product="endoribonuclease Dicer isoform X3"
                     /protein_id="XP_053289783.1"
                     /db_xref="GeneID:128450392"
                     /translation="

MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLAKELSHQIRGHYQRNAKRTVFLVNTALSVVQQAAAVRTHSDLQVGEYTDLEETSAWTDQRWSQEITENQVLVMTCHIFLHVLRTKILLLSKINLVVFDDCHLAITDHPYCEIMKLFEGCSCSPRILGLTASLLNGKCDPSDLEQKIQNLESILKSNAETATDLVVLDRYSSQPREVVLDCGPYLDKSGLSSHLLVELDEALYFLNDCNMSVDREDRNPTLISKQILSDCRAVLQVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDLKYVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEVESKERPESNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGQSIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERTKAFEEDLATYKAIEKILRNKCSKSVEVIDFEVEQVLDDDNTLPPYVLRSEDGGPQVTINTAIGHINRYCARLPSDPFTHLAPKCKTLEMQDGCFQSTLYLPINSPLRVPVKGPTMTCARLAEKAVALVCCEKLHKTGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAMNSTSAEGSSTHQRTPPGALASLLPNPYLESLISQCTLARVK"

     misc_feature    377..970
                     /gene="dicer1"
                     /note="DEXH-box helicase domain of endoribonuclease Dicer;
                     Region: DEXHc_dicer; cd18034"
                     /db_xref="CDD:350792"
     misc_feature    order(377..388,395..397,446..469,590..592,779..781,
                     872..874)
                     /gene="dicer1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350792"
     misc_feature    order(554..559,626..631,704..706,710..715,722..724,
                     797..805)
                     /gene="dicer1"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350792"
     misc_feature    1070..1348
                     /gene="dicer1"
                     /note="Partner-binding domain of the endoribonuclease
                     Dicer; Region: Dicer_PBD; cd15903"
                     /db_xref="CDD:277191"
     misc_feature    order(1079..1084,1091..1093,1097..1102,1277..1282,
                     1289..1294,1301..1303,1310..1315,1322..1324)
                     /gene="dicer1"
                     /note="Trbp binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277191"
     misc_feature    1367..1945
                     /gene="dicer1"
                     /note="C-terminal helicase domain of the endoribonuclease
                     Dicer; Region: SF2_C_dicer; cd18802"
                     /db_xref="CDD:350189"
     misc_feature    order(1598..1606,1814..1816,1871..1873,1877..1879)
                     /gene="dicer1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350189"
     misc_feature    order(1826..1828,1832..1834,1907..1909,1913..1915)
                     /gene="dicer1"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350189"
     misc_feature    2141..2407
                     /gene="dicer1"
                     /note="Dicer dimerization domain; Region: Dicer_dimer;
                     pfam03368"
                     /db_xref="CDD:427264"
ORIGIN      

attctcgttctccaaacgagactagcgtgtcattagtaccgcggatagtttcgtcttacgttatattcctactagtgtagcagggctcaagtggtcccaccgtgagaggaaacccaccaaatcggataagcaagggtggatggcagttaggatatcaaacgaatgatttcaagccatttagtcaagacgaacaatctacaatcatacaccagtgaccattatgaaatgaaataaagtggacgactggaggagcccagccccctgacctccaactctttgaaacatggcgggtttacagcttgtcactcctgctacttcacccatggggcctttctttggtctgccatggcagcaggaggctatccatgacaacatctatacacccaggaaatatcaggtagaacttcttgaagcagctcttgaacataatactattgtctgcttgaatactggctcagggaagacctttattgcagtacttctagcaaaagagctctcccaccaaatccgtggacattatcaaagaaacgccaagaggactgtttttctggtgaacacagctttgtctgtagttcagcaagcagctgcagtcaggactcactcagaccttcaggtgggagagtacacagatttggaggaaacctcagcatggactgaccaacggtggagtcaagagataaccgagaatcaggtgctggtcatgacttgccacatattcctgcatgttttgaggactaaaatcttactgttatctaaaatcaacttggtggtttttgatgattgtcacctggccattacagaccacccctactgtgagataatgaagctgtttgaagggtgttcatgtagtcctcgtatcctgggtctcacagcttctcttctaaatggaaaatgtgacccttcagacctggagcagaagatccagaatttggaatcaatcttgaagagcaatgctgagactgccacagaccttgttgtcctagacagatactcctctcagccaagagaagtggtgctggactgcggcccctatttggacaagagtggtctttcctcccatttgttggtggaactggacgaagctctctacttcctgaacgattgcaacatgtctgttgacagggaggatcgcaatcctacattaatttccaaacagatcctgagtgactgccgggctgtgctgcaggtgctggggccctggtgtgcagataaggcggcaggcattatggtgcgggagctccaaaagtatatcaaacatgagcaggaagagctcaaccgtaagttcctgctcttcactgacaccatcctgcgcaaagtgcatgccctctgcgaggagcacttctcccctgcttcactggacctcaagtatgtcacccctaaggtcatccggctgcttgagatcctccacgaatacaagccctttgagcggcagcagtttgaaagcgttgagtggtacaacaatcggaaccaggacaactatgtgtcctggagtgactcagaggatgacgatgaggatgaggaggtggagtccaaagagaggcctgaatccaactttccctcacctttcaccaacattctgtgtgggatcatctttgtggagaggcgttacacagctgttgttctcaaccgtctaatcaaagaagcggggaagcaggacccagagctggcttatatcagcagcaacttcataactggccaaagtattggcaaaaaccagccacggaacaaacagatggaggtggagtttaggaaacaagaggaggttctccgcaaattccgggctcatgaaaccaacctccttattgccaccagcattgtggaggaaggtgtggatattccaaagtgcaacctggtagtgcgatttgacctgcccactgagtacaggtcctacgtccagtccaaaggcagagctcgggctcctgtctccaactacataatgctggctgacagtgagaggaccaaagctttcgaggaagatctcgctacatacaaggccatagagaagatcctgaggaacaagtgttccaagtcagttgaggtgattgactttgaagtggagcaggttctggatgatgacaacacccttccaccttatgtgcttcgatctgaggatggaggtccccaggtcaccattaacacagccattggacacattaacaggtattgtgctcggctacccagcgatccatttacccacttggcacccaaatgtaaaactttggagatgcaggatggatgtttccagtcaacactctacttacctatcaattcccctctgcgagtccctgttaagggtcctacaatgacctgtgccagattagctgagaaagctgttgcactagtatgctgtgagaaactccacaaaacgggtgagttggatgatcacctgatgcccgttgggaaggagactgtcaagtatgaggaggagttggaccttcatgatgaggaggagaccagtgtcccaggccgacctggttctaccaaaaggaggcagtgctaccccaaagctatgaactcaacttccgcagaaggaagctctacccaccagaggacaccaccaggtgctttggcatccttactgccaaacccatacctcgaatcccttatttcccagtgtacactcgctcgggtgaagtgaccatctccattgagctgcaaaagtctggcttcatgctcacatccaaccagctcaacctcattacccgactgcaccagtacatcttttcccacatactccgcctggagaaacctgcactggagttcaagcccacgctagcagactctgctta

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