2024-05-01 04:56:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_052941514 2806 bp mRNA linear INV 13-JAN-2023 DEFINITION PREDICTED: Mya arenaria uncharacterized LOC128229709 (LOC128229709), transcript variant X1, mRNA. ACCESSION XM_052941514 VERSION XM_052941514.1 DBLINK BioProject: PRJNA918361 KEYWORDS RefSeq. SOURCE Mya arenaria ORGANISM Mya arenaria Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Myida; Myoidea; Myidae; Mya. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_069125) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026914265.1-RS_2023_01 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2806 /organism="Mya arenaria" /mol_type="mRNA" /isolate="MELC-2E11" /db_xref="taxon:6604" /chromosome="4" /sex="female" /tissue_type="Siphon/mantle" /country="USA: Larrabe Cove, Machiasport, ME" /collection_date="2018-06-01" gene 1..2806 /gene="LOC128229709" /note="uncharacterized LOC128229709; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:128229709" CDS 77..688 /gene="LOC128229709" /codon_start=1 /product="uncharacterized protein LOC128229709 isoform X1" /protein_id="XP_052797474.1" /db_xref="GeneID:128229709" /translation="
MENLVYLPVEKIHLKDLYDWSIPVQRCKSTKVALSPVGSPASSPRKSGVKVDLENGKGTGSLVKTNEHDIALFRYKTTVFAVKEECPHAGGPLHLGEIEDLGDELLCVRCPWHGWRISLHDGHVTLPKGHNFQSTVVYPVKITQEGQISIGFRGLDSKYFKVDEILFVFKQCTEIFWSRRTICLIFMPPTQDNDKSQCKSIHI"
misc_feature 263..529 /gene="LOC128229709" /note="Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cl00938" /db_xref="CDD:445190" misc_feature order(332..334,338..343,404..406,410..415,419..421, 425..427) /gene="LOC128229709" /note="iron-sulfur cluster [ion binding]; other site" /db_xref="CDD:239550" misc_feature order(332..334,338..343,404..406,413..415,419..421) /gene="LOC128229709" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:239550" polyA_site 2806 /gene="LOC128229709" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtcgaaaatgtaaacaaacatagcgggaaaaataattttgttttgccgtagggcaaaacttaaagaatgcctaaaaatggagaacttagtgtatcttcctgtagaaaagattcacttaaaggatttgtatgactggtccattcctgtacagagatgcaaatcaacaaaagttgcactttccccggtagggtcaccggcctcctccccacgcaagagcggagtcaaagtagatctggagaatggaaagggaactggctctcttgtaaagaccaatgaacatgacattgcactctttcgatataaaaccactgtgtttgcagtcaaagaggaatgcccgcatgcaggtggacctctccatcttggagagatagaagacctaggagatgagcttctgtgtgtccgctgtccctggcatggctggcggatcagtctgcacgatggacatgtcaccctgcctaaggggcacaactttcagtccacagttgtctacccagtcaagatcacgcaggaagggcaaatatcaattggctttcgaggactagattcaaaatatttcaaagttgatgagattttgtttgtatttaagcagtgtactgaaatcttttggagccggaggacaatttgtcttatatttatgccgcctactcaggacaatgataagtcacaatgcaaaagtattcatatatagggacttgatacagtgaatatttctcgtgtgagaggataaagcagtgagggtggcatggtgtatacaaaaccagttagtatccaatatatcctttgatttcacagtaacataatattgcttgtacaatattgcacaattacaagctacaataactttataatgcattttttggtcagttatgtttaaaaacatattacagcaagcaatacacttttcagatttataccaaactcacacattggtacagcgggcatcaaaattaattattatgccccccttcgaagaaaaggggtaccggtatatattactttgcacatgtcggtcggttggtaggtcggtcagtcggtcagttgggcatgaccagtagatgaccccgattgattataggggtcaaaggtcaaggtcacagtgacctttaatggtaaaatgattttaaagcttgtcaaagtgataactcaagaatgcctagacctatggtcatcaaactgcatatggaggctgggcctgaccagtagatgacctctattgatttgtgggatcatcgggtcaaaggtcaaggtcacagtgaccttgaatgataaaaggttgtccgagtgataactcgacaatgcctgaacccatggccctcaaacttgacgtggaggcttagcctgaccagtagatgacccctattcattttaaggttcttcgggtcaatggttaaggtcaaagtgacctttaatgatagaaggttgtcttagtgataactagacaatgcctgcaccaatggccctcaaacttgacttagaggttgggccgaggacccctctcgattttgggggtcatcaagtcaaaagtcaaggtcacagtgaccttgaaggcaaacttaacaattccttgaccaatggtcatcaaacttgacatgaaggttggccctgactagtagatgacccctattgatttttggggtcatctggataaagttcaaggtcagagtgacgttttatgcgaaaaagtaaacaaacctcccagtggtatctcaacaatgcctgaacagtagatgacaccttttgatattaggaatcatagggtcaaaggtcatggtcacagtgaccttaaatgcgaaaatgttcttagagtgataacttgacaatgcctgcacctttggccctcaaacttgacttgggggttgggcctgacctgtagatgaccccttttatttaaggggtcatcaaaggtcaaggtcacactgaccttgaactctgaaagcttttctgtgtgataaactgacaatgcctgcacccatgaccctcaaacttgacatttaggttttgggtcaccagttgatgacgcctttggattttgaggtcaaaggtcatggtcatctgaaaatatcagtcatcatctgaacaggataaaacattttgaatggtcataatcttatgacaaatcagctatcatttcagcccatgcatatttcattcaattgtccatataatcctgacaacatggcgctcaggggggtgggggcataatgtttaacaaacatcccttgttatgcttgaaatagctagcagagatcttgcttgtttgtgggttggattccttaacataatgcttatgaaaattattgagtttgaaatacatttagactagtctagggcctatgtaacgaaaaggttcaagtttcaagttggacacaaattagaatacatgtatgcaaatcttgactttttaataaaggatttaccaaattgttttatttttattttgtatacaggtgcatattcattttaacattttaaaatggtctttgtttttcttacatctgactatttgtacattgtgtttgttgaatgaaatggttagctatgaaacagttctgtaatgtggacatgttgcaatatatactgttctacttttatggtactattaacgatttttatcagctatctatagacgtttagttttatgtttttattacgaatatatagggcttgttttaaaccatagtcagtattgctttagttttgtttaaaattaatattcagtgtattcacatacaaattgtcagtaatttgtttatttactgcataactgtaactgtattgttaagaaaaataaaatttccttattcga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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