LOCUS       XM_052195323            1497 bp    mRNA    linear   ROD 26-FEB-2023
DEFINITION  PREDICTED: Apodemus sylvaticus homeobox B8 (Hoxb8), transcript
            variant X1, mRNA.
ACCESSION   XM_052195323
VERSION     XM_052195323.1
DBLINK      BioProject: PRJNA899886
KEYWORDS    RefSeq.
SOURCE      Apodemus sylvaticus (European woodmouse)
  ORGANISM  Apodemus sylvaticus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Apodemus; Sylvaemus group.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_067481) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_947179515.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/25/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Apodemus sylvaticus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10129"
                     /chromosome="10"
     gene            1..1497
                     /gene="Hoxb8"
                     /note="homeobox B8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 18 Proteins"
                     /db_xref="GeneID:127693986"
     CDS             50..784
                     /gene="Hoxb8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8 isoform X1"
                     /protein_id="XP_052051283.1"
                     /db_xref="GeneID:127693986"
                     /translation="

MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKEKLERAPETAAEQGDAQKGDKK"

     misc_feature    order(488..502,506..508,557..559,575..577,614..616,
                     620..625,632..637,641..649,653..658)
                     /gene="Hoxb8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(494..496,503..505,623..625,632..637,644..646)
                     /gene="Hoxb8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    497..655
                     /gene="Hoxb8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

cccaactacagcctgcgccaccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcggcggcagcttccagcacccttcgcaaatccaggagttctaccacgggccatcgtcgctgtccacggctccctaccagcagaacccgtgcgcagtggcgtgccacggggaccccggcaacttctacggctacgaccctctgcagcgccagagcctgttcggtgcgcaggatccagacctggtacagtacgcagactgcaagctcgcggcagccagcggcctgggcgaggaggccgaggggtctgagcagagcccgtcgcccacacagctctttccctggatgcgtcctcaagcagccgccggacgcaggcgaggccgccagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggaggatcgaggtatcgcacgcgctgggactgacagagagacaggtcaaaatctggttccagaatcggagaatgaagtggaaaaaggagaacaacaaagacaagttccccagcagtaaatgcgagcaggaggagctggagaaagagaagctggagcgggcgccggagaccgccgccgagcagggcgatgcgcagaagggtgacaagaagtaggctccagctgggactgcctgggccccggactagcccgctcgtccgccggtccctcctgcgaccacgccgccgccgctgccgccgccgccgccgcccgccccccgcctccgagagctccggccccgcgagcggagccaggagctgggcctcccaccgcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggtccgaggggaaaaataagaaaaggattttaagcaaggactccctcgtcctgcgagggtgatcgactgcggcctggcagaatcccctcgccccctccccatgtaaaaaagcctccttgtgcaatggtctttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttttcccaacaacatgaaactgcctattcacgccgtaattctatctgtctccctctcactttctctctttctctctctctctttctctcaccgcgtcctcatctttcctcgcaactcccctctccccgctgccctccctagctggctttctctcttgcttctctcttttcctcctgtccccccccccaccccctttggtttgacaattttgtcttaagtgtttctcaaaagagattactttagttagcatgcgcgctgtgagcaattgttaaaaagtgtt

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