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2024-05-19 06:23:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_051579070             704 bp    mRNA    linear   PLN 01-NOV-2022
DEFINITION  Gilbertella persicaria uncharacterized protein (B0P05DRAFT_548849),
            mRNA.
ACCESSION   XM_051579070
VERSION     XM_051579070.1
DBLINK      BioProject: PRJNA895887
            BioSample: SAMN06296463
KEYWORDS    RefSeq.
SOURCE      Gilbertella persicaria
  ORGANISM  Gilbertella persicaria
            Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota;
            Mucoromycotina; Mucoromycetes; Mucorales; Mucorineae;
            Choanephoraceae; Gilbertelloideae; Gilbertella.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Chang,Y., Wang,Y., Mondo,S., Ahrendt,S., Andreopoulos,W., Barry,K.,
            Beard,J., Benny,G.L., Blankenship,S., Bonito,G., Cuomo,C.,
            Desiro,A., Gervers,K.A., Hundley,H., Kuo,A., LaButti,K., Lang,B.F.,
            Lipzen,A., O'Donnell,K., Pangilinan,J., Reynolds,N., Sandor,L.,
            Smith,M.E., Tsang,A., Grigoriev,I.V., Stajich,J.E. and
            Spatafora,J.W.
  TITLE     Evolution of zygomycete secretomes and the origins of terrestrial
            fungal ecologies
  JOURNAL   iScience 25 (8), 104840 (2022)
   PUBMED   35996588
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 704)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 704)
  AUTHORS   Mondo,S.J., Chang,Y., Wang,Y., Ahrendt,S., Andreopoulos,W.,
            Barry,K., Beard,J., Benny,G.L., Blankenship,S., Bonito,G.,
            Cuomo,C., Desiro,A., Gervers,K.A., Hundley,H., Kuo,A., Labutti,K.,
            Lang,B.F., Lipzen,A., O'Donnell,K., Pangilinan,J., Reynolds,N.,
            Sandor,L., Smith,M.W., Tsang,A., Grigoriev,I.V., Stajich,J.E. and
            Spatafora,J.W.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2021) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_026251990).
            
            ##Metadata-START##
            Organism Display Name :: Gilbertella persicaria var. persicaria CBS
                                     190.32-T v1.0
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Gilbertella persicaria"
                     /mol_type="mRNA"
                     /strain="CBS 190.32"
                     /culture_collection="CBS:190.32"
                     /type_material="culture from epitype of Choanephora
                     persicaria"
                     /db_xref="taxon:101096"
                     /chromosome="Unknown"
     gene            1..704
                     /locus_tag="B0P05DRAFT_548849"
                     /db_xref="GeneID:75904282"
     CDS             60..308
                     /locus_tag="B0P05DRAFT_548849"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_051433244.1"
                     /db_xref="GeneID:75904282"
                     /db_xref="InterPro:IPR007858"
                     /db_xref="JGIDB:Gilper1_548849"
                     /translation="
MSEHPLLYTETSVYSSPSTSVKQETKEQQKPVMTEFAPRSYLDSTVVPTLLEGMKLLVSERPADPLAYLGHFLLSRSNEQQK"
     misc_feature    174..293
                     /locus_tag="B0P05DRAFT_548849"
                     /note="dimerization/docking (D/D) domain found in the
                     DPY30/SDC1 family; Region: DD_DPY30_SDC1; cd22965"
                     /db_xref="CDD:438534"
     misc_feature    order(174..176,186..191,195..200,210..212,219..224,
                     231..236)
                     /locus_tag="B0P05DRAFT_548849"
                     /note="Bre2 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438534"
     misc_feature    order(180..185,192..197,204..206,219..221,228..230,
                     240..245,252..260,264..269,276..281)
                     /locus_tag="B0P05DRAFT_548849"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438534"
ORIGIN      
agcttgttcattatgtgtattaaaaaaaattcttttttttttctttttttcttttttatatgtctgagcatcctttattatatacagaaacaagtgtctatagttcgccctcaacaagtgtgaagcaagaaaccaaagaacaacaaaaaccagtgatgactgaatttgcgccacgctcttatcttgattctactgttgtccctacattattagaaggcatgaaattacttgtgtctgaacgtcctgcggatcctcttgcatatcttggtcatttcctactctcacgatccaatgaacaacagaaataaactgtctttgaaattgtcctgtacttctctttaaggtaggacgagtatattaattcttttttctctttttctgtcctttttcattaaataaatagtatgggcttattagataaaattaaatcaagtgtagaaatgtggaaaattgaaaaatataccaagcgtagacctattacttcccctgattttgaacaaaaagatcgagaattttatcgtcaaaactataaagatggtgtctatcttcatcatacaggcaatgatacaggtggtgtcatcacttccatcagcagaaagacaacactgctaaaaacaaaaagtgaaaagataatgcggtcctcagaaaactataataacaatgttcgataaaataaaataatgtgcttcatttccataatagtg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]