2024-05-19 06:23:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_051579070 704 bp mRNA linear PLN 01-NOV-2022 DEFINITION Gilbertella persicaria uncharacterized protein (B0P05DRAFT_548849), mRNA. ACCESSION XM_051579070 VERSION XM_051579070.1 DBLINK BioProject: PRJNA895887 BioSample: SAMN06296463 KEYWORDS RefSeq. SOURCE Gilbertella persicaria ORGANISM Gilbertella persicaria Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina; Mucoromycetes; Mucorales; Mucorineae; Choanephoraceae; Gilbertelloideae; Gilbertella. REFERENCE 1 (bases 1 to 704) AUTHORS Chang,Y., Wang,Y., Mondo,S., Ahrendt,S., Andreopoulos,W., Barry,K., Beard,J., Benny,G.L., Blankenship,S., Bonito,G., Cuomo,C., Desiro,A., Gervers,K.A., Hundley,H., Kuo,A., LaButti,K., Lang,B.F., Lipzen,A., O'Donnell,K., Pangilinan,J., Reynolds,N., Sandor,L., Smith,M.E., Tsang,A., Grigoriev,I.V., Stajich,J.E. and Spatafora,J.W. TITLE Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies JOURNAL iScience 25 (8), 104840 (2022) PUBMED 35996588 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 704) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (31-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 704) AUTHORS Mondo,S.J., Chang,Y., Wang,Y., Ahrendt,S., Andreopoulos,W., Barry,K., Beard,J., Benny,G.L., Blankenship,S., Bonito,G., Cuomo,C., Desiro,A., Gervers,K.A., Hundley,H., Kuo,A., Labutti,K., Lang,B.F., Lipzen,A., O'Donnell,K., Pangilinan,J., Reynolds,N., Sandor,L., Smith,M.W., Tsang,A., Grigoriev,I.V., Stajich,J.E. and Spatafora,J.W. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (27-SEP-2021) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_026251990). ##Metadata-START## Organism Display Name :: Gilbertella persicaria var. persicaria CBS 190.32-T v1.0 ##Metadata-END## FEATURES Location/Qualifiers source 1..704 /organism="Gilbertella persicaria" /mol_type="mRNA" /strain="CBS 190.32" /culture_collection="CBS:190.32" /type_material="culture from epitype of Choanephora persicaria" /db_xref="taxon:101096" /chromosome="Unknown" gene 1..704 /locus_tag="B0P05DRAFT_548849" /db_xref="GeneID:75904282" CDS 60..308 /locus_tag="B0P05DRAFT_548849" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_051433244.1" /db_xref="GeneID:75904282" /db_xref="InterPro:IPR007858" /db_xref="JGIDB:Gilper1_548849" /translation="
MSEHPLLYTETSVYSSPSTSVKQETKEQQKPVMTEFAPRSYLDSTVVPTLLEGMKLLVSERPADPLAYLGHFLLSRSNEQQK"
misc_feature 174..293 /locus_tag="B0P05DRAFT_548849" /note="dimerization/docking (D/D) domain found in the DPY30/SDC1 family; Region: DD_DPY30_SDC1; cd22965" /db_xref="CDD:438534" misc_feature order(174..176,186..191,195..200,210..212,219..224, 231..236) /locus_tag="B0P05DRAFT_548849" /note="Bre2 binding site [polypeptide binding]; other site" /db_xref="CDD:438534" misc_feature order(180..185,192..197,204..206,219..221,228..230, 240..245,252..260,264..269,276..281) /locus_tag="B0P05DRAFT_548849" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:438534" ORIGIN
agcttgttcattatgtgtattaaaaaaaattcttttttttttctttttttcttttttatatgtctgagcatcctttattatatacagaaacaagtgtctatagttcgccctcaacaagtgtgaagcaagaaaccaaagaacaacaaaaaccagtgatgactgaatttgcgccacgctcttatcttgattctactgttgtccctacattattagaaggcatgaaattacttgtgtctgaacgtcctgcggatcctcttgcatatcttggtcatttcctactctcacgatccaatgaacaacagaaataaactgtctttgaaattgtcctgtacttctctttaaggtaggacgagtatattaattcttttttctctttttctgtcctttttcattaaataaatagtatgggcttattagataaaattaaatcaagtgtagaaatgtggaaaattgaaaaatataccaagcgtagacctattacttcccctgattttgaacaaaaagatcgagaattttatcgtcaaaactataaagatggtgtctatcttcatcatacaggcaatgatacaggtggtgtcatcacttccatcagcagaaagacaacactgctaaaaacaaaaagtgaaaagataatgcggtcctcagaaaactataataacaatgttcgataaaataaaataatgtgcttcatttccataatagtg
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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