2024-05-19 07:42:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_050430476 1694 bp mRNA linear PLN 30-AUG-2022 DEFINITION PREDICTED: Quercus robur probable polygalacturonase At1g80170 (LOC126725661), transcript variant X1, mRNA. ACCESSION XM_050430476 VERSION XM_050430476.1 DBLINK BioProject: PRJNA872134 KEYWORDS RefSeq. SOURCE Quercus robur (English oak) ORGANISM Quercus robur Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_065538) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: Quercus robur Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1694 /organism="Quercus robur" /mol_type="mRNA" /db_xref="taxon:38942" /chromosome="5" gene 1..1694 /gene="LOC126725661" /note="probable polygalacturonase At1g80170; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:126725661" CDS 22..1410 /gene="LOC126725661" /codon_start=1 /product="probable polygalacturonase At1g80170 isoform X1" /protein_id="XP_050286433.1" /db_xref="GeneID:126725661" /translation="
MRKLRSCSFSTCLIVYVLFTFTFLTTNIEASGSLLQLPLSGSTRTRPRSKRVLFVGDFGAQGDGVNDDTELPLSGSTRRSRTRPRSKRVLFIGDFGAQGDGVNDDTEAFKDAWEVACSFSGRIRIVLPTGYIFLIYPIDIVGPCRSKVTIQISGTIVAPEDPDAWHGLNPRKWLYFQGVNHLTIEGGGLINGMGQEWWARSCKTNSTNPCEHAPTAITFHRCKYLNVKNLMVLDSQQMHISFTKCLRVVASHLEVIAPARSPNTDGIHISASKGVEVKDSIIRTGDDCISIVSNSSRIRIKDIICGPGHGISIGSLGKSNSWSQVQDVLVDGALLSNTDNGVRIKTWQGGSGFATDITFQNVLMENVSNPIIIDQYYCDSRLPCANQTSAVKVENIAFMHIKGTSATKKAIKFACSDDYPCEGLYLEDIDLVSSSGGMTKSFCWEAYGSSSGLINPPACFPC"
misc_feature 22..1407 /gene="LOC126725661" /note="Polysaccharide Lyase Family 6; Region: PL-6; cl19188" /db_xref="CDD:450265" polyA_site 1694 /gene="LOC126725661" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ttttgacatgtgtgtcagaccatgaggaagcttagatcttgttcattttcgacatgtctcattgtttacgttctttttacattcacatttctgacaacaaatatagaagcttctggctctctcttacagctcccactatctgggtcgaccagaacccgacccagatccaaacgggtcctttttgttggtgactttggtgctcaaggagatggtgttaatgatgatactgagctcccactatctgggtcgaccagaaggtccagaacccgacccagatccaaacgggtcctttttattggtgactttggtgctcaaggagatggtgttaatgatgatactgaggctttcaaagatgcctgggaagtagcttgttctttctctggacgaataagaattgtgcttccgactggatatatttttctgatttatcctattgatattgttgggccttgccgatcaaaggtcactattcagatatctggtacaatagttgcacccgaagatcctgatgcctggcatggtttgaatcctcgtaaatggctctacttccaaggggtgaatcaccttaccatagaagggggaggcttaatcaacgggatgggacaggaatggtgggctcggtcttgcaaaactaactcaactaatccgtgtgaacatgctccaacggccattactttccataggtgcaagtatttgaatgtcaagaaccttatggtgcttgatagtcaacaaatgcacatttcattcaccaaatgtcttcgggttgttgcatcccatctcgaagtgatagcacctgctcgtagccctaatactgatggaattcacatcagtgcatcaaaaggtgttgaggtcaaggatagcataatcagaacaggagatgactgcatctctattgtcagcaactcttcacggatccggatcaaagacattatctgtggcccaggtcatggcataagtatcggaagcttgggaaaatcaaactcttggtcacaggtgcaagatgttctggtggatggagctttgctgtccaacactgataatggggtgaggatcaaaacatggcagggaggtagtggttttgccactgatattactttccagaatgtgttgatggaaaatgtatcaaatccgataataatagatcaatattattgcgactcacggcttccatgtgcaaatcagacttcagctgttaaagtggagaatatagcctttatgcacattaaaggaacttcagcgacaaagaaagcaataaaatttgcttgtagtgatgactacccatgtgaagggttatacttggaagatattgatcttgtatcaagttctgggggaatgacaaaatcgttttgttgggaagcatatggctcaagttcaggattaattaacccacctgcttgctttccgtgttgagaaagcttcattaaacagaaagtcatactggattcaacaagaaataaacaggcctaatgagaagtggctaaaatgttttttctcccccgtatatttttggggtcaagcctgaagacttttgtacataattctttgatgatgaatgctctgccaattcattcatcccattatatgtaataagcctgttaccattttctgtaaatcatttgtctgccctaaaggactattacaaatagactcaaataaaataaaataaaaagcataatttagtgacattttatcaa
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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