2024-05-19 07:42:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_050039462 7549 bp mRNA linear VRT 26-FEB-2023 DEFINITION PREDICTED: Epinephelus moara stromal interaction molecule 1-like (LOC126386816), transcript variant X7, mRNA. ACCESSION XM_050039462 VERSION XM_050039462.1 DBLINK BioProject: PRJNA868339 KEYWORDS RefSeq. SOURCE Epinephelus moara (kelp grouper) ORGANISM Epinephelus moara Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_065508) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_006386435.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/26/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7549 /organism="Epinephelus moara" /mol_type="mRNA" /isolate="mb" /db_xref="taxon:300413" /chromosome="3" /tissue_type="muscle" gene 1..7549 /gene="LOC126386816" /note="stromal interaction molecule 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:126386816" CDS 2986..5055 /gene="LOC126386816" /codon_start=1 /product="stromal interaction molecule 1-like isoform X6" /protein_id="XP_049895419.1" /db_xref="GeneID:126386816" /translation="
MVTETDGRVPADVNLLTAPVSVNCLCPCLCLCLCLCPCLCLCLCLCTCLCLCPCPCLCLCPCPCLCLCLCPCPCLCLCPCLCPCPCPCLCLCLCPCLCLCPCPCLCPCPCLCLCLCPCPCPCPCLCPCLCLCLCLCPCLCPCPCLCLCLCPCVLVYNWTVEQVVDWLVVSVELPQYTETFRKHQLDGKALPRLAVKNTTLTVSLLKILDRSHAQKLQLKALDIVLFGPPPGRHSRWKDLVLGLSILMALGGCWFAYIQNRKSKDDLGKLVKDLEGLQRAEQSLLDLQAKLQKAQEEQLCVQVEKVKVEEELRSEINSAKQEAQRLQELREGTENERSRQKYAEEELEQVRMALKKAERELESRAHWAPPEALQKWLQLTHEVEVQYYNIKKQSAERQLLQAREGAEKIKKKRSSLFGTFHVAHSSSLDDVDHKILSAKQALAEVTAALREKLHRWQQIECLTGFCLVNNPGLGALAAALNLDPSFLGLRPPTPQHLLLSDDLDDMDEDILSPGTLQSQSLMPLRPRIGDPALTFSSQRDIMNRSDSDSSLPLSHGESRSLYGSKPFLLSSRLHPLQGSGVGGGGGAGGGVGGLEKSSSLGELRGSPAGTLASSCSTRSLCVTSDAATDVPAIFSSSTSSSSSNSGRGTGIQLPTRRSPLEEDGGEESESSGSRRRNAFNKIFKKKQGRH"
misc_feature 3448..3666 /gene="LOC126386816" /note="SAM (Sterile alpha motif); Region: SAM_superfamily; cl15755" /db_xref="CDD:449586" misc_feature <3757..>4362 /gene="LOC126386816" /note="Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:224117" misc_feature 4084..4377 /gene="LOC126386816" /note="STIM1 Orai1-activating region; Region: SOAR; pfam16533" /db_xref="CDD:435404" misc_feature order(4099..4101,4108..4113,4117..4122,4129..4134, 4141..4146,4153..4155,4345..4350,4357..4359,4366..4368) /gene="LOC126386816" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:212596" misc_feature order(4102..4107,4114..4116,4369..4374) /gene="LOC126386816" /note="putative inhibitory helix interface [polypeptide binding]; other site" /db_xref="CDD:212596" polyA_site 7549 /gene="LOC126386816" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gacattatccagagatatctgcaaactgataactgtcattctttacttcattcttctgaatgtgatatctcaaaacggccatcagggaattttttcaaatttggcacaaacgtccacttggaccaaagaatgaactgatagattttggtagttaaatatcaaaggtcaaggtcactgtagacttgcatttgtctcattctcgtgaacgcaatatctcaagaacggctggagggaatttcttcaaatttgccacaaacgtcctctttgagtcagtgatgaaatgattagattttggtggtcaaaggtcaaggtcagtatcaccttgtgtccatctcattctggtgatcgtaatatttcaagaaagccttgatggaatctttgtcaaatttggcaccaacgtccacttagacttgaggatgaccggattggattttggtggtcaaagatcagggtcactgtgaacttgcatttgtctcattcttgagaatgcaatatatctcaagaacgccacaagggaatttctacaaatttagcacagattcacctggatttaagaatgacctgattagattttggtggtcaaagataaaaggtcaaggtcactgtggccttgcatctgtctcattcttgtgaacccgatatctgaagaaggacgtgagggaattttctgaagtttggcacaaacatccacttagactcaagattgaactgattagaatgtgatgaccgatggtcaaaggtcagtgtgacctcaaaacacatgtttttagccctaactcaagaattcatccactaattctgaccaaacttgacacaaatgtctaacaggataaaataatgaaggtcaaaaggtcaaaggtcagcttgactgtgacatcatcatgttttaacgtcatatctcaggaacagaaggggagacatttggtcagatactgaattggtgactctaatcttgaacctgtgctgattgtatagatcttctgtgtgtgaagcatccatgttttcactgacatggagggagactgtcagagacactggactggtgggcggagtcatacaaccacagggtggactggtgggcggagtcatacaaccgttaattctaaaggaactaattctgttttctgtcgtcttattggttcataaacagtctgtatgttggcattagcatgttagcatgttagcatcaacagaaccagcagcatgtttaagttcctccattttcacacaaacagtcagacgtctgttggagctgaaggaaaaaacagcaacaaacatcatcagaggaactcacgagtcaaagagatgtgaggtttcctctcagtaaacacaaacagcgatgcatcatctccgctcagcgtttgtttactctgtaaacaaaacaatgacatcatcacctcgactcacagaaccaaacctcattttagaaatccgaactttaaggttcatgttgttttaaagacgtcagaagatataagatttatctgctctggaaggttctttaaaagaaggaaggaaggaggagagcagaagagaaagggatgaagagcggaggggaggaaggagacaggaagacaggaaggccagaaaaagtggacagaaaagaaagaaggggaaagaaaggaatacaaaaaaggacagaagggaagaaggaacaagagatggaaaagaagggaaggaggacagaaggaaggaaggataattcaagaagggatgagaaagaacaaaaggaagaaggaaggaaagattggtgaaaaagagaaaacacaaggaaagaaagagaaggaaggaaggaaggacagaaagggaaaaagaaataggaatgaaagaaagaaagaacaaaagaaaggaaagaaggaggaagggcagaaataaaaagtgacataggtcaagaaggaaggaaagaaaggaagataggtaggatatataggaaagaagaaagcaaagaaggaaaggcagttaggaaagtaagaaagaaagaaggaagggaggaaggaaagaaggtaaacagtgacataagtcaagaaagaaggaaagaaagaggaaaggaaataatgaaagggaaaagataagatgaaagtgttaaaagggatgaaagaccaaagaaaagaccaaagaaagagagaaaggaaggaagacaaagaaaaataagggaagaagaagaaaaaagggaataaatacaatgtgacataaggcaagaaggaaggaaagaaatgaaatgaaaaggaaagttgaaaatgaaaaggggaattaaaaaactacaaaggacaaggggaagaagaaagaaagaggaaggtaggaaagaaacaaaggaagcaaagtagtaaagaaagagaagaagtaaaaggtaaagaaagaaagaaagaaagaaagaaatgagggcaggaagggaataaatacaatataacaaggcaagaaggaaggaaaggaaaatgaaagttgaaagtgaaaaggaattaaaaactacaaagggaaaggagaaagaaagaggagagaaagaaaagaagcaaggtaggaaagacaggaaagaagaaataggaaagaaagaagaaaaaagatggtgaggaaaaaatggatgaaagaaacgcaaaagaaaagtaggaaaggatgaaagaactaggaaacaaagagagagagagagagagagagaaagaaagtaagttaagaagaaggaagggaagaaagacaaaagtggcataagtcaagaaggaagaaaagaaagaaagaaataaaaagaaagaaggaagccaagaaggaaggaaagaaagactgaagtgtaaattaatgaaagagggaacaaagggaggagagaaagaaagacagacagacagaggggactaacgagcagaacggctcattgagtataaaaataaaatcctattttcagcttcacttaattttccggctcagtttgtctcagacatgacgtcaaaacagacacatgaagaagaacatgtttatttatagcagggacagtatggacacatggtcacggagacagacggacgtgtcccagcagatgttaacctgttaactgcccctgtttctgttaactgtctctgtccctgtctctgtctctgtctctgtctctgtccctgtctctgtctctgtctctgtctctgcacctgtctctgtctctgtccctgtccctgtctctgtctctgcccctgcccctgtctctgtctctgtctctgtccctgtccctgtctctgtctctgtccctgtctctgcccctgtccctgtccctgtctctgtctctgtctctgtccctgtctctgtctctgtccctgtccctgtctctgtccctgtccctgtctctgtctctgtctctgcccctgtccctgtccctgtccctgtctctgtccctgtctctgtctctgtctctgtctctgcccctgtctctgtccctgtccctgtctctgtctctgtctctgtccctgtgtcctagtgtataactggacggtggagcaggtggtggactggctggtcgtcagcgtggagcttcctcagtacacagagaccttcaggaaacaccagctggatggaaaggccttacccaggctggcagtgaagaacaccaccctgactgtgtccctgctgaagatcttggacaggagtcatgctcagaaactgcagctcaaagctctagacattgtgctgttcggacctccaccaggcagacacagccggtggaaggatctggttctgggtctgtccatcctgatggcgttgggtggctgctggtttgcctacatccagaataggaagtccaaagacgacctggggaagctggtgaaagatttggagggtctgcagagggctgagcagagcctgctggacctgcaggcgaagctgcagaaggctcaggaggagcagctctgcgttcaggtggagaaggtgaaggtggaggaggagctgaggagcgagatcaactcggccaaacaggaagctcagcggctccaagagctccgagaaggaactgagaatgagaggagccgacagaaatacgctgaggaggagctggaacaggtccgtatggcgctgaagaaggcggagagggagctggagtcacgggctcactgggctccacctgaggctctgcagaagtggctgcagctgacgcacgaggtggaggttcagtactacaacatcaagaagcagagcgcagagaggcagctgctgcaggccagagagggggcagagaagatcaagaagaagaggagctctctgtttggaacgtttcatgtagctcacagctcctcgctggacgacgtcgaccacaagattctctctgccaaacaggccctggccgaggtgacggcggcgctgcgggagaagcttcatcgctggcagcagatcgagtgtctgacgggtttctgcctggtcaataaccctggcctgggagcgctagctgccgccctcaacctggacccgtctttcctcggcctgagacctcccacccctcagcacctcctcctctccgatgaccttgacgacatggacgaggacatcctgtctccagggacgctgcagtctcagagtctgatgcccctgcgaccgaggataggagaccccgctctgacattcagctctcagagggacatcatgaaccgctcagactctgactcctccctccctctttctcacggcgaatcacgaagcttgtacggctccaagcccttcctcctttcatccaggctccaccccctgcagggctccggggtcggtggaggaggaggagcaggaggaggagtaggaggcctggagaagagctccagtctgggagagctgaggggcagccctgctggcaccctcgcctcgtcctgctccacccgctccctctgcgtcacgtccgacgccgccaccgacgtcccagccatcttctcatcttccacctcgtccagctcttctaacagcggtcgggggacaggcatccagctcccgaccaggcggagcccattggaggaggacggaggtgaggagagcgaatcgtccggcagccgcaggagaaacgcttttaataagatctttaagaagaagcagggacgccactgaacgccgctgcgtctgaactcagacaaaactcacacacctgcttctgtccgctactgactcatgacgagaccttcatcttcatcacaatgagatcctcaccttcattgtgatgtaggaaccaaactgtcgctcacagggaacatgtttttttttttaacgcttcactcaggcattttttatatcaaccttttctgccaaatgattttatttttctgtcagactgagaaaagatcagatttttggactcaccgagggaaaacatacgacgctcctcacaacgcccaggggacacggagacgaacgattcctacaaagacacaaaccaaagaagaagaacaagaggacgactgacgacagtgaaaatagataatttgtacttttacttcctgtttagtttttcagagaaattttgatgaagagatttaaaacttaaatagacccttttaaggccgatatcacgatgacatcatgttatcagctggaggtgcagctgcctctcccccacagggctgtaggctccataggagtgttaaaatgtgtttgtcttgttgtgttattgggagccagaatagaaggagtcatggctcaaaaccagccgccactgcccgtcaacaaaaacaaagacaactatggttaaatgtgataagaccaaaggactggacggaggccatcatcaaaaatgctcacatgtgcagcgcacacttcatatcaggttagggaaaaagtatttcctgttgtagggatgaataaggttatgtgtattaagggttatcatgtccacctcatcagaaactggggagggattaagaggaatattggatttctctggaacgctaactttttagcacattagctaacgttagcttccatagcaaaacaaacaagtgtggtcctcctttgtaagattggcttcctgtgacatcatccatccactgagtgagagcatacgggtcggccagtctggtcccgttggtcagtgtttacttattcaagtaacactggcggtcccggagagtgagtgacctgacatggtgcgttggtaaattcagtctgacgctctacactaaaatgagagccctgttggtggaagaaacggagcgttatatttctacatgaatgaaccaacggttaagttaatcacacattcactccgctcggcgctctgctgctccgtctccacagacagagtgtccagagtgcgctctgccactctgagagtgcgctgctctggataacccaacgctacattcagacagcgctcccaatttatcaacgctccagtttgtgtcagagtgcgctcccacactcagaatgagtgtttctgaacgcaccactcacatcatcttcctccatcgtctaaaacaagacaacacaacttgttagctagcgctagctaatgtctgtggagaactgttttgcctccagctaagccccgctaattgaacaggtctgccatatagtacgccaaaaaagatttagtaagtctaaatacagagtatgtcaaatgttatgttctactacatccggctgtattttacagtgtgtaagccagcgtgctttactggctgttctgacccacaatcctctgcacagaggacgatatgtcacatcaactgagccgcaaacagatgacagctcattgacagctgtcatctgttaaagtgaataaaataataaatatatttattatatattatattatatattatataaatattacaaacatctaaaggacataacaataaaaaataacagtgacagagaactgcaggtgtaatttcactgtcacaaatataatctgttagcatctgcaatctgagcagttataactttaaatttaaactacacgtcacaaagtaataacagcagagctctgcaggttgatcttcgtctctggcgaactctgtaagtggtgtttgctatataaaaacaagagggtcagagttcagggcataacgttatgagacagtcgtacgtccagactgtgttcatgaaacagtacgtacgttttaaaggcagctgcagtaacgactgaaagtaaaaagaaagagtatgcgattcagaacgcagctgttactgcctcctttgtttatgtttgtcagatgcatgatgggaactcacatggtcgtctgtaaatgccttgttttgtttcatatgtatatatcagagtgaagtttatcttgagtttcagtttttattttggtgcatggtggaaaaaatctgatggttttatatctgatagtttcattttgtcactttgagattcaactattcatcgatcaccagaaaattaatctgcaatcattcagataatttatggttttagtcaatttttaagcaaaaatgccaacgttctttgtttccagcgtctccagtattatcatttactgatttttagttttatctgaatttgaacattttgttgttttgtgttggtcggacaaaacaagagacatctgaagaaataaaaagtgtttttcactctttcctgaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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