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2024-05-19 07:42:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_050039462            7549 bp    mRNA    linear   VRT 26-FEB-2023
DEFINITION  PREDICTED: Epinephelus moara stromal interaction molecule 1-like
            (LOC126386816), transcript variant X7, mRNA.
ACCESSION   XM_050039462
VERSION     XM_050039462.1
DBLINK      BioProject: PRJNA868339
KEYWORDS    RefSeq.
SOURCE      Epinephelus moara (kelp grouper)
  ORGANISM  Epinephelus moara
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae;
            Epinephelinae; Epinephelini; Epinephelus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_065508) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_006386435.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/26/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7549
                     /organism="Epinephelus moara"
                     /mol_type="mRNA"
                     /isolate="mb"
                     /db_xref="taxon:300413"
                     /chromosome="3"
                     /tissue_type="muscle"
     gene            1..7549
                     /gene="LOC126386816"
                     /note="stromal interaction molecule 1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins"
                     /db_xref="GeneID:126386816"
     CDS             2986..5055
                     /gene="LOC126386816"
                     /codon_start=1
                     /product="stromal interaction molecule 1-like isoform X6"
                     /protein_id="XP_049895419.1"
                     /db_xref="GeneID:126386816"
                     /translation="
MVTETDGRVPADVNLLTAPVSVNCLCPCLCLCLCLCPCLCLCLCLCTCLCLCPCPCLCLCPCPCLCLCLCPCPCLCLCPCLCPCPCPCLCLCLCPCLCLCPCPCLCPCPCLCLCLCPCPCPCPCLCPCLCLCLCLCPCLCPCPCLCLCLCPCVLVYNWTVEQVVDWLVVSVELPQYTETFRKHQLDGKALPRLAVKNTTLTVSLLKILDRSHAQKLQLKALDIVLFGPPPGRHSRWKDLVLGLSILMALGGCWFAYIQNRKSKDDLGKLVKDLEGLQRAEQSLLDLQAKLQKAQEEQLCVQVEKVKVEEELRSEINSAKQEAQRLQELREGTENERSRQKYAEEELEQVRMALKKAERELESRAHWAPPEALQKWLQLTHEVEVQYYNIKKQSAERQLLQAREGAEKIKKKRSSLFGTFHVAHSSSLDDVDHKILSAKQALAEVTAALREKLHRWQQIECLTGFCLVNNPGLGALAAALNLDPSFLGLRPPTPQHLLLSDDLDDMDEDILSPGTLQSQSLMPLRPRIGDPALTFSSQRDIMNRSDSDSSLPLSHGESRSLYGSKPFLLSSRLHPLQGSGVGGGGGAGGGVGGLEKSSSLGELRGSPAGTLASSCSTRSLCVTSDAATDVPAIFSSSTSSSSSNSGRGTGIQLPTRRSPLEEDGGEESESSGSRRRNAFNKIFKKKQGRH"
     misc_feature    3448..3666
                     /gene="LOC126386816"
                     /note="SAM (Sterile alpha motif); Region: SAM_superfamily;
                     cl15755"
                     /db_xref="CDD:449586"
     misc_feature    <3757..>4362
                     /gene="LOC126386816"
                     /note="Chromosome segregation ATPase [Cell cycle control,
                     cell division, chromosome partitioning]; Region: Smc;
                     COG1196"
                     /db_xref="CDD:224117"
     misc_feature    4084..4377
                     /gene="LOC126386816"
                     /note="STIM1 Orai1-activating region; Region: SOAR;
                     pfam16533"
                     /db_xref="CDD:435404"
     misc_feature    order(4099..4101,4108..4113,4117..4122,4129..4134,
                     4141..4146,4153..4155,4345..4350,4357..4359,4366..4368)
                     /gene="LOC126386816"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:212596"
     misc_feature    order(4102..4107,4114..4116,4369..4374)
                     /gene="LOC126386816"
                     /note="putative inhibitory helix interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:212596"
     polyA_site      7549
                     /gene="LOC126386816"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
gacattatccagagatatctgcaaactgataactgtcattctttacttcattcttctgaatgtgatatctcaaaacggccatcagggaattttttcaaatttggcacaaacgtccacttggaccaaagaatgaactgatagattttggtagttaaatatcaaaggtcaaggtcactgtagacttgcatttgtctcattctcgtgaacgcaatatctcaagaacggctggagggaatttcttcaaatttgccacaaacgtcctctttgagtcagtgatgaaatgattagattttggtggtcaaaggtcaaggtcagtatcaccttgtgtccatctcattctggtgatcgtaatatttcaagaaagccttgatggaatctttgtcaaatttggcaccaacgtccacttagacttgaggatgaccggattggattttggtggtcaaagatcagggtcactgtgaacttgcatttgtctcattcttgagaatgcaatatatctcaagaacgccacaagggaatttctacaaatttagcacagattcacctggatttaagaatgacctgattagattttggtggtcaaagataaaaggtcaaggtcactgtggccttgcatctgtctcattcttgtgaacccgatatctgaagaaggacgtgagggaattttctgaagtttggcacaaacatccacttagactcaagattgaactgattagaatgtgatgaccgatggtcaaaggtcagtgtgacctcaaaacacatgtttttagccctaactcaagaattcatccactaattctgaccaaacttgacacaaatgtctaacaggataaaataatgaaggtcaaaaggtcaaaggtcagcttgactgtgacatcatcatgttttaacgtcatatctcaggaacagaaggggagacatttggtcagatactgaattggtgactctaatcttgaacctgtgctgattgtatagatcttctgtgtgtgaagcatccatgttttcactgacatggagggagactgtcagagacactggactggtgggcggagtcatacaaccacagggtggactggtgggcggagtcatacaaccgttaattctaaaggaactaattctgttttctgtcgtcttattggttcataaacagtctgtatgttggcattagcatgttagcatgttagcatcaacagaaccagcagcatgtttaagttcctccattttcacacaaacagtcagacgtctgttggagctgaaggaaaaaacagcaacaaacatcatcagaggaactcacgagtcaaagagatgtgaggtttcctctcagtaaacacaaacagcgatgcatcatctccgctcagcgtttgtttactctgtaaacaaaacaatgacatcatcacctcgactcacagaaccaaacctcattttagaaatccgaactttaaggttcatgttgttttaaagacgtcagaagatataagatttatctgctctggaaggttctttaaaagaaggaaggaaggaggagagcagaagagaaagggatgaagagcggaggggaggaaggagacaggaagacaggaaggccagaaaaagtggacagaaaagaaagaaggggaaagaaaggaatacaaaaaaggacagaagggaagaaggaacaagagatggaaaagaagggaaggaggacagaaggaaggaaggataattcaagaagggatgagaaagaacaaaaggaagaaggaaggaaagattggtgaaaaagagaaaacacaaggaaagaaagagaaggaaggaaggaaggacagaaagggaaaaagaaataggaatgaaagaaagaaagaacaaaagaaaggaaagaaggaggaagggcagaaataaaaagtgacataggtcaagaaggaaggaaagaaaggaagataggtaggatatataggaaagaagaaagcaaagaaggaaaggcagttaggaaagtaagaaagaaagaaggaagggaggaaggaaagaaggtaaacagtgacataagtcaagaaagaaggaaagaaagaggaaaggaaataatgaaagggaaaagataagatgaaagtgttaaaagggatgaaagaccaaagaaaagaccaaagaaagagagaaaggaaggaagacaaagaaaaataagggaagaagaagaaaaaagggaataaatacaatgtgacataaggcaagaaggaaggaaagaaatgaaatgaaaaggaaagttgaaaatgaaaaggggaattaaaaaactacaaaggacaaggggaagaagaaagaaagaggaaggtaggaaagaaacaaaggaagcaaagtagtaaagaaagagaagaagtaaaaggtaaagaaagaaagaaagaaagaaagaaatgagggcaggaagggaataaatacaatataacaaggcaagaaggaaggaaaggaaaatgaaagttgaaagtgaaaaggaattaaaaactacaaagggaaaggagaaagaaagaggagagaaagaaaagaagcaaggtaggaaagacaggaaagaagaaataggaaagaaagaagaaaaaagatggtgaggaaaaaatggatgaaagaaacgcaaaagaaaagtaggaaaggatgaaagaactaggaaacaaagagagagagagagagagagagaaagaaagtaagttaagaagaaggaagggaagaaagacaaaagtggcataagtcaagaaggaagaaaagaaagaaagaaataaaaagaaagaaggaagccaagaaggaaggaaagaaagactgaagtgtaaattaatgaaagagggaacaaagggaggagagaaagaaagacagacagacagaggggactaacgagcagaacggctcattgagtataaaaataaaatcctattttcagcttcacttaattttccggctcagtttgtctcagacatgacgtcaaaacagacacatgaagaagaacatgtttatttatagcagggacagtatggacacatggtcacggagacagacggacgtgtcccagcagatgttaacctgttaactgcccctgtttctgttaactgtctctgtccctgtctctgtctctgtctctgtctctgtccctgtctctgtctctgtctctgtctctgcacctgtctctgtctctgtccctgtccctgtctctgtctctgcccctgcccctgtctctgtctctgtctctgtccctgtccctgtctctgtctctgtccctgtctctgcccctgtccctgtccctgtctctgtctctgtctctgtccctgtctctgtctctgtccctgtccctgtctctgtccctgtccctgtctctgtctctgtctctgcccctgtccctgtccctgtccctgtctctgtccctgtctctgtctctgtctctgtctctgcccctgtctctgtccctgtccctgtctctgtctctgtctctgtccctgtgtcctagtgtataactggacggtggagcaggtggtggactggctggtcgtcagcgtggagcttcctcagtacacagagaccttcaggaaacaccagctggatggaaaggccttacccaggctggcagtgaagaacaccaccctgactgtgtccctgctgaagatcttggacaggagtcatgctcagaaactgcagctcaaagctctagacattgtgctgttcggacctccaccaggcagacacagccggtggaaggatctggttctgggtctgtccatcctgatggcgttgggtggctgctggtttgcctacatccagaataggaagtccaaagacgacctggggaagctggtgaaagatttggagggtctgcagagggctgagcagagcctgctggacctgcaggcgaagctgcagaaggctcaggaggagcagctctgcgttcaggtggagaaggtgaaggtggaggaggagctgaggagcgagatcaactcggccaaacaggaagctcagcggctccaagagctccgagaaggaactgagaatgagaggagccgacagaaatacgctgaggaggagctggaacaggtccgtatggcgctgaagaaggcggagagggagctggagtcacgggctcactgggctccacctgaggctctgcagaagtggctgcagctgacgcacgaggtggaggttcagtactacaacatcaagaagcagagcgcagagaggcagctgctgcaggccagagagggggcagagaagatcaagaagaagaggagctctctgtttggaacgtttcatgtagctcacagctcctcgctggacgacgtcgaccacaagattctctctgccaaacaggccctggccgaggtgacggcggcgctgcgggagaagcttcatcgctggcagcagatcgagtgtctgacgggtttctgcctggtcaataaccctggcctgggagcgctagctgccgccctcaacctggacccgtctttcctcggcctgagacctcccacccctcagcacctcctcctctccgatgaccttgacgacatggacgaggacatcctgtctccagggacgctgcagtctcagagtctgatgcccctgcgaccgaggataggagaccccgctctgacattcagctctcagagggacatcatgaaccgctcagactctgactcctccctccctctttctcacggcgaatcacgaagcttgtacggctccaagcccttcctcctttcatccaggctccaccccctgcagggctccggggtcggtggaggaggaggagcaggaggaggagtaggaggcctggagaagagctccagtctgggagagctgaggggcagccctgctggcaccctcgcctcgtcctgctccacccgctccctctgcgtcacgtccgacgccgccaccgacgtcccagccatcttctcatcttccacctcgtccagctcttctaacagcggtcgggggacaggcatccagctcccgaccaggcggagcccattggaggaggacggaggtgaggagagcgaatcgtccggcagccgcaggagaaacgcttttaataagatctttaagaagaagcagggacgccactgaacgccgctgcgtctgaactcagacaaaactcacacacctgcttctgtccgctactgactcatgacgagaccttcatcttcatcacaatgagatcctcaccttcattgtgatgtaggaaccaaactgtcgctcacagggaacatgtttttttttttaacgcttcactcaggcattttttatatcaaccttttctgccaaatgattttatttttctgtcagactgagaaaagatcagatttttggactcaccgagggaaaacatacgacgctcctcacaacgcccaggggacacggagacgaacgattcctacaaagacacaaaccaaagaagaagaacaagaggacgactgacgacagtgaaaatagataatttgtacttttacttcctgtttagtttttcagagaaattttgatgaagagatttaaaacttaaatagacccttttaaggccgatatcacgatgacatcatgttatcagctggaggtgcagctgcctctcccccacagggctgtaggctccataggagtgttaaaatgtgtttgtcttgttgtgttattgggagccagaatagaaggagtcatggctcaaaaccagccgccactgcccgtcaacaaaaacaaagacaactatggttaaatgtgataagaccaaaggactggacggaggccatcatcaaaaatgctcacatgtgcagcgcacacttcatatcaggttagggaaaaagtatttcctgttgtagggatgaataaggttatgtgtattaagggttatcatgtccacctcatcagaaactggggagggattaagaggaatattggatttctctggaacgctaactttttagcacattagctaacgttagcttccatagcaaaacaaacaagtgtggtcctcctttgtaagattggcttcctgtgacatcatccatccactgagtgagagcatacgggtcggccagtctggtcccgttggtcagtgtttacttattcaagtaacactggcggtcccggagagtgagtgacctgacatggtgcgttggtaaattcagtctgacgctctacactaaaatgagagccctgttggtggaagaaacggagcgttatatttctacatgaatgaaccaacggttaagttaatcacacattcactccgctcggcgctctgctgctccgtctccacagacagagtgtccagagtgcgctctgccactctgagagtgcgctgctctggataacccaacgctacattcagacagcgctcccaatttatcaacgctccagtttgtgtcagagtgcgctcccacactcagaatgagtgtttctgaacgcaccactcacatcatcttcctccatcgtctaaaacaagacaacacaacttgttagctagcgctagctaatgtctgtggagaactgttttgcctccagctaagccccgctaattgaacaggtctgccatatagtacgccaaaaaagatttagtaagtctaaatacagagtatgtcaaatgttatgttctactacatccggctgtattttacagtgtgtaagccagcgtgctttactggctgttctgacccacaatcctctgcacagaggacgatatgtcacatcaactgagccgcaaacagatgacagctcattgacagctgtcatctgttaaagtgaataaaataataaatatatttattatatattatattatatattatataaatattacaaacatctaaaggacataacaataaaaaataacagtgacagagaactgcaggtgtaatttcactgtcacaaatataatctgttagcatctgcaatctgagcagttataactttaaatttaaactacacgtcacaaagtaataacagcagagctctgcaggttgatcttcgtctctggcgaactctgtaagtggtgtttgctatataaaaacaagagggtcagagttcagggcataacgttatgagacagtcgtacgtccagactgtgttcatgaaacagtacgtacgttttaaaggcagctgcagtaacgactgaaagtaaaaagaaagagtatgcgattcagaacgcagctgttactgcctcctttgtttatgtttgtcagatgcatgatgggaactcacatggtcgtctgtaaatgccttgttttgtttcatatgtatatatcagagtgaagtttatcttgagtttcagtttttattttggtgcatggtggaaaaaatctgatggttttatatctgatagtttcattttgtcactttgagattcaactattcatcgatcaccagaaaattaatctgcaatcattcagataatttatggttttagtcaatttttaagcaaaaatgccaacgttctttgtttccagcgtctccagtattatcatttactgatttttagttttatctgaatttgaacattttgttgttttgtgttggtcggacaaaacaagagacatctgaagaaataaaaagtgtttttcactctttcctgaca
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]