2024-04-29 04:46:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_049635901 1626 bp mRNA linear MAM 28-FEB-2023 DEFINITION PREDICTED: Panthera uncia homeobox B8 (HOXB8), transcript variant X1, mRNA. ACCESSION XM_049635901 VERSION XM_049635901.1 DBLINK BioProject: PRJNA861302 KEYWORDS RefSeq. SOURCE Panthera uncia (snow leopard) ORGANISM Panthera uncia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_064814) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_023721935.1-RS_2023_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/27/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1626 /organism="Panthera uncia" /mol_type="mRNA" /isolate="11264" /db_xref="taxon:29064" /chromosome="E1" /sex="female" /tissue_type="Tissue Culture" /dev_stage="adult" /collection_date="2000-05-31" gene 1..1626 /gene="HOXB8" /note="homeobox B8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:125926456" CDS 46..777 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X1" /protein_id="XP_049491858.1" /db_xref="GeneID:125926456" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature order(484..498,502..504,553..555,571..573,610..612, 616..621,628..633,637..645,649..654) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(490..492,499..501,619..621,628..633,640..642) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 493..651 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ccaactacagccgccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcgggggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccaccgctccctaccagcagaacccgtgcgccgtggcgtgccacggggacccgggcaacttctacggctacgacccgctgcagcgacagagcctgttcggtgcgcaggatccagacctggtgcagtacgccgactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggttcagagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggcggatcgaggtatcgcatgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccggaggcggcggacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggccgcggctgccctccgtccgcgggtcccccgaccacgccgccgtcgcccgcccccgcccgagagagctctggccccgcgagcggggccgggagcctggcctcccgccgcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggccgggggagggaaaagaaaaggattttaggcaaggactccctcgccctgcgagggtgagcggctgcggcctggctgagccccccacgcccccgccccgtgtaaaaagcctccttgtgcaatggtcttttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctccccttctctcttctctctctctctctctctctctctctctctctcgtcctcatttccccctcccaacccctctctccccgctgccctccctagctcgctggctttctctcttgcttctctcttttcctcccaacacccccgccccctttggtttggcaatttcgtcttaagtgtttctcaaaagaggttactttagttagcatgcgcgctgtgggcaattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatccgtgaattgctttattggggggtgggagggctaattatatattttgttgttcctctatactttgttctgttgtctgcgcctgaaaagggcggaagagttacaataaagtttacaagcgaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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