2024-05-19 07:42:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_048410743 3364 bp mRNA linear INV 26-MAY-2022 DEFINITION PREDICTED: Bombus terrestris copper-transporting ATPase 1 (LOC100646432), transcript variant X13, mRNA. ACCESSION XM_048410743 VERSION XM_048410743.1 DBLINK BioProject: PRJNA839043 KEYWORDS RefSeq. SOURCE Bombus terrestris (buff-tailed bumblebee) ORGANISM Bombus terrestris Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_063280) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bombus terrestris Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3364 /organism="Bombus terrestris" /mol_type="mRNA" /db_xref="taxon:30195" /chromosome="12" gene 1..3364 /gene="LOC100646432" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns" /db_xref="GeneID:100646432" CDS 16..3219 /gene="LOC100646432" /codon_start=1 /product="copper-transporting ATPase 1 isoform X6" /protein_id="XP_048266700.1" /db_xref="GeneID:100646432" /translation="
MKYPLPLCKVHKKLVANRSNFHYQSFPCLQFYDDNMIDENMKLLGDEEDDTDYEGTTQMVYVSRSQKMKDSTNTSTMKVNIDGMRCQSCVKNIEGTIGSRPEVLSVKVILEEKLGYVEYKAEEITPNELVEAIEDMGFTASLCSDESNAIEKIEKNDSLQSTISICTVHIDGMTCASCVKTIIDNLSEKAGIKQANVSLEKKEATVSYNDKDLTAEQISGFIEEMGFNSFVKEVNGKVVGEETPMNLSLKNNSAQEELPLQMNGGGDVKIQNETAKCFLHITGMTCASCVAAIEKHCKKLYGVNNILVALMAAKAEVVFDPNKIRAIDIVSSISELGFPTTLIEESGTGEGDIELKITGMTCASCVNKIESTVKKLPGVHSATVALATQRGKFKYDVEKIGVRDIIECINKLGFTAMLFSNKDKENRDYLDQREEINKWRTAFLVSLIFGIPCMLAMTYFMVIMSIGEKTHEDMCCVVPGLSWENLILFIFSTPVQFFGGWHFYVQAYKALKHGTTNMDVLISMTTTISYLYSVAVLAAAMIMQEHVSPQTFFDTPPMLLVFISLGRWLEHVAKGKTSEALSKLLSLKATDAVLVTLGPNNELLSERLITIDLVQRGDILKVVQGAKVPVDGRVLSGNSTCDESLITGESMPVPKKKGSVVIGGSINQNGPLLITATHTGEHTTLAQIVRLVEEAQTNKAPIQHLADKIAGYFIPFVIVVSIVTLFVWIVVGYVNVNSLPISHNDQINKHGMNREEIIFQYAFRSALCVLAIACPCALGLATPTAVMVGTGVGALNGILIKGAEPLENAHKVKCIVFDKTGTITHGIPMVTKINLFVNETAYSLAKFLVIICTAETNSEHPIASAIVRYVKETIGSEATGQCMNFQAVAGCGLKCKVSHISTTLADALKSDKILNYINEVKRLPSGTHNLNNVSIDVTPISSTRQNLELLLSPDSHGDQTNPDDVYEICVGNREWMRRNAINIPQEVELKMVTEEDLGHTAVLAAVNNVLVAMISVADTVKPEAHLAIYTLKKMGLEVILLTGDNRKTAVSIARQSICRSVTFAQSC"
misc_feature 247..438 /gene="LOC100646432" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(265..273,280..282) /gene="LOC100646432" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 523..696 /gene="LOC100646432" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(532..540,547..549) /gene="LOC100646432" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 856..1038 /gene="LOC100646432" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(865..873,880..882) /gene="LOC100646432" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1075..1263 /gene="LOC100646432" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1093..1101,1108..1110) /gene="LOC100646432" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1342..>3180 /gene="LOC100646432" /note="Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl21460" /db_xref="CDD:451251" ORIGIN
attccatctagaacgatgaaatatcctttacctttgtgcaaagttcacaagaaattagtagcgaatcggtcaaatttccactatcagtcgtttccttgcttgcagttttacgacgacaatatgatcgatgagaatatgaaactacttggcgatgaggaggacgataccgattacgaaggcacgacacagatggtgtacgtttctcggtcgcagaaaatgaaagattccacgaatacttctactatgaaggttaatatcgacggtatgagatgccagagctgtgtgaagaacatcgagggaaccataggtagccgaccggaggttttaagcgttaaagtaatcctagaagagaagctcggttacgtcgaatataaagcggaagaaattacgccgaacgaattggtcgaagcgatagaggatatgggattcactgcttccctatgcagcgacgaaagtaacgctatcgaaaagatagaaaaaaatgattcgttacaatcaactatcagtatttgtactgtacatattgatggaatgacttgtgcgtcttgtgttaagactatcattgacaatttatcggagaaagcaggaataaaacaggcgaacgttagtttagagaagaaggaagctacggtttcttataacgacaaggacctaacagctgaacaaatatcagggttcatcgaagaaatgggttttaattcgtttgttaaagaagtaaacggtaaagttgtaggagaggaaacaccaatgaatttatcgttgaaaaacaattccgcgcaagaggaacttccgttgcaaatgaatgggggaggtgatgtaaagattcaaaacgaaacagcaaaatgctttttacatataacggggatgacctgtgcttcctgcgttgctgccatagaaaaacattgcaaaaaattatacggtgtaaataatatcttggtcgcattgatggcggccaaggcagaagttgtctttgatccgaataagataagggcgattgacatcgtttctagcatatcggaattgggcttccctactactttgatcgaagaatctggtactggagagggagatattgaattaaaaatcacaggtatgacatgtgcatcttgcgtgaataagatagaatcgactgtgaagaaattaccaggcgtccattctgccacagttgcgttggcaactcaacgtggcaaattcaaatacgatgtagaaaaaattggcgtcagggacattatcgaatgcattaacaaattaggtttcaccgcaatgttatttagtaataaagataaagaaaacagagactacttggatcagagggaagaaataaacaagtggcggacagcttttttagtgtccttaatatttggcataccgtgtatgttagccatgacatactttatggtaatcatgtctattggtgaaaaaacgcacgaagatatgtgctgcgtagttcctggtctttcctgggaaaatttaatccttttcatattttctacaccagtccagttttttggcggctggcatttttacgttcaagcatacaaagctttgaaacacggtacaactaatatggatgttttaatttctatgactactacgatatcttatttgtactcagtcgccgtacttgcagcagctatgataatgcaggaacacgttagtcctcagacattttttgatactcctcccatgttgttagtgttcatcagtttaggaagatggttagaacatgtcgcaaagggtaaaacctcggaggcgttatcgaaattattgtctttgaaagcaacggacgcggtcctggttactttgggccctaacaatgaactactatctgagcgtttaatcactatagatttggtacaacgaggcgatatcttaaaagtagtgcaaggtgccaaagttcccgtcgatggtagagttttatcaggcaattctacttgcgacgagagtctaattaccggggaaagtatgccggtaccaaaaaagaagggatcggttgtaataggtggctcgataaatcaaaatggtccgcttctaattactgccacgcatacaggagaacatacgacattggcacaaattgtacgattagtagaagaggcacaaacgaataaggcacctattcaacatttagccgataagatagctggttatttcataccttttgttatagttgtttctatagtaactttattcgtttggatagtagtgggatatgtaaatgtaaacagtttaccaatctcgcacaacgatcaaatcaataaacacggaatgaatagagaagaaattatatttcaatatgcttttcgaagcgcgctttgcgtattagcaatagcttgtccatgcgcgttaggattggctacgccaactgctgttatggttggtactggagtcggagcattaaatggtatcttaataaaaggtgctgaacctttggaaaatgcgcacaaagttaagtgtattgtatttgataagaccggaacaataacacatggtataccaatggtaacaaagataaatctctttgtaaatgaaacagcttattcactagcaaagtttttagtcattatttgtacagctgaaacaaatagcgaacatccgatcgcatcagcaattgtgcgctacgtgaaggaaacaataggctctgaagcaactgggcagtgcatgaattttcaagcagttgctggttgtggacttaaatgtaaagtatcacatatttcaactacgttggccgatgcattaaaatctgataagattcttaactatattaacgaggtaaaaagattaccttctggaacgcataacttaaataatgtgtcaatcgatgttacgccaatttcgagcacgagacaaaatttggaattgttgctaagtccggattcccatggtgaccagactaatcctgacgatgtatatgaaatttgcgttggtaacagagagtggatgcgaagaaatgctattaatataccacaagaagtagagttgaaaatggttactgaagaagatctaggacatactgctgttttagcagcagtgaataatgtactggtggctatgatcagcgtagcagatacggttaaaccagaagcccatctggcaatatatactttgaaaaaaatgggtttagaagttattcttttaacaggagataataggaagactgctgtttctatcgctagacaaagtatttgcagaagtgttaccttcgcacaaagttgctaaaattcaacgtttacaagatcaaggcttaagagttgcaatggtaggagatggtgttaatgatagtcctgcccttgcacaatcagatgttggcattgcaatatcttctggtacggatgttgctgttgaagctgccgatgtagtcctc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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