2024-05-19 14:42:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_048059046 2739 bp mRNA linear VRT 09-MAY-2022 DEFINITION PREDICTED: Anser cygnoides ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), transcript variant X2, mRNA. ACCESSION XM_048059046 VERSION XM_048059046.1 DBLINK BioProject: PRJNA832243 KEYWORDS RefSeq. SOURCE Anser cygnoides (Swan goose) ORGANISM Anser cygnoides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Anser. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025927674) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Anser cygnoides Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2739 /organism="Anser cygnoides" /mol_type="mRNA" /isolate="SCWG-2014" /db_xref="taxon:8845" /chromosome="Unknown" /tissue_type="hypophysis; hypothalamus; ovary" /breed="Sichuan white goose" gene 1..2739 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:106034025" CDS 610..1467 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X2" /protein_id="XP_047915003.1" /db_xref="GeneID:106034025" /translation="
MPSLAGSGRPGGREAPKMKSLLRHGLAVCLALTTMCTSLLLMYGGIGGGGHPEPRQQQQQQQQQVAAVPSRPPGRGQQRPALPVGAGLLEGYISVLEHKPLKMHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRLETRTTYCKSPRD"
misc_feature 892..1416 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" polyA_site 2739 /gene="ST6GALNAC5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ttttacaactgaaccgcacaccattagcacaaagaagggcacaataaaaaacttcagaaggctgctcgtaaaggaagggtgggaaaacgcccgtcttcagctaccgaagaggcggcacgggcagcaagcctgggagaaactcttgttctacgggaaaaataccgagggaagctgcgatcgaaaggctttggaatcggctcggggaaagcttgcaagggggagggcggtggcagcgccgcaccaggagttgggggcgtcggtgtggttcgggaacgcggcttccaagcgctgcctgcccgctgccggggagccagcggcggccgggcgggggcggctgcgcgggacggggacggggctggggctggggacggaaccggagccgctgccctccggcggagccccgcggccggggggaggcataagttaacttccacctgccctgcagccgccgctgcgccggcgggaggaggcggaggcggaggcggaggcaggcggggcagccgaggacccggctctggcagccccgggggtccggccggccgcggctccccccgcatccccgccacggcggcgcttccccggccgagccatggccgcggcatccccgccatgccgagcctagcgggcagcgggaggcccggcggccgggaggcgcccaaaatgaagagcctgctgcgccacgggctggccgtctgcttggcgctcaccaccatgtgcaccagcttgttgctcatgtacggcggcatcggcggcgggggccacccggagccgcggcagcagcagcagcagcagcagcagcaggtggcggcggtgcccagccgcccgccgggacgcggccagcagcgcccggcgctccccgtcggagccgggctcctggagggctacatcagcgtcctggagcacaagcctttaaaaatgcattgcaagagctgtgcattggtaaccagttctggacaccttctgggaagtaaacaaggtgacagaatcgacgagacagagtgcgtaatacgaatgaatgatgcacctactcgaggttatggaaaagatgttggaaacaaaacgagccttcgagtcattgcacactccagtattcagaggattttgcgaaatcgcaacgaactcttaaatatgagccacggtgccgtgtttatcttctggggtcctagcagctacatgaggagagatggtaaaggcttggtatataacaacctgcagctgatgaatcagatactgcctcaattaaaagcatatatgatttctcgccacaagatgcttcaatttgatgacctttttaaacgagaaactgggaaagacaggaagatatccaacacttggcttagcacgggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagactggaaaccagaaccacttactgtaaatcaccccgagattaaaccagtggtctgagggatgagcgcacaagaccgcaatcacaatcacctcctgtatcagccgtcagtgtgttggacctcctgggacagcaagacaacctagaggagaagggtaacagaatttgcagctgataactgcaacaacagtcaggaagttatgaaggagtatatcgagtgctttccattgaactgtgtattaatccagtatagccttttttggccatctaacttcctgtgtgtgtatgtgacttgtgaaaagcaatttgagtatcattaatgggatggttaattcattatgattttttaaagtacaacaccactgaattttcatagtgaaaacttacagtacttatttaatggaggtttttatgcaacctaggccagtatttttctaattcacagttctgtggttgttgatctttcataatctttcaaatccagaattaatattgctgatggtttgaaaggcctagctttttatttataggatttgtttgaaaaatatgattctatatagcatgtaattaatatttgatctggaaatgttgcatttcttttaaaaattttgggctccgttccagcataaagcctttaacagcaagaatggtcccatgtgcagatctagctaactttacattcatgttaatatgaaaatggtagtgaaaattcttttcgatattaatgtgaattttctgctgtgatatcaaactgctggtttttaatcagaggtgggggaagaagggcaaagttcatcaaaaaatgactgtttatagcaacgcgttctcaatgaagaagaccaactaaggctagaggggttgcgttttgttttgcctgttgtcatcctgtaagaggctgaaggagcaaccttcctgaggtaacaagctacaaaaacaggcaacaacagtttgcaacaacggcttgcaacaacgtgaccaaacttctgaaatcaagaagctgcaccaccaggtactacagtatcagccatactagccaaaaagatggtaatgttacacctgtatggtctatgccttccactgttccaagaccatcaccgatctcagagatcgtggatcacactgaggtgagatgtggaaggatttccacgagtatgaaattgtgcccctgcaaacagccaagttacacttggcattttctttgtgaagtactaaagcctggcaaacgcgagggggtgggcaatgctagctctgtatatggaacctcacactgtgtcttactgggttatactcggcttatgaataaagaacatttcagtta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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