2024-04-29 10:43:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_047845765 1473 bp mRNA linear MAM 04-MAR-2023 DEFINITION PREDICTED: Prionailurus viverrinus homeobox B8 (HOXB8), transcript variant X2, mRNA. ACCESSION XM_047845765 VERSION XM_047845765.1 DBLINK BioProject: PRJNA827818 KEYWORDS RefSeq. SOURCE Prionailurus viverrinus (fishing cat) ORGANISM Prionailurus viverrinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Prionailurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025927605) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_022837055.1-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/03/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1473 /organism="Prionailurus viverrinus" /mol_type="mRNA" /isolate="Anna" /db_xref="taxon:61388" /chromosome="Unknown" /sex="female" /tissue_type="kidney" /dev_stage="adult" gene 1..1473 /gene="HOXB8" /note="homeobox B8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:125158537" CDS 1..729 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X2" /protein_id="XP_047701721.1" /db_xref="GeneID:125158537" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature order(436..450,454..456,505..507,523..525,562..564, 568..573,580..585,589..597,601..606) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(442..444,451..453,571..573,580..585,592..594) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 445..603 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
atgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcgggggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccaccgctccctaccagcagaacccgtgcgccgtggcgtgccacggggacccgggcaacttctacggctacgacccgctgcagcgacagagcctgttcggtgcgcaggatccagacctggtgcagtacgccgactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggttcagagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggcggatcgaggtatcgcatgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccggaggcggcggacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggccgcggctgccctccgtccgcgggtcccccgaccacgccgccgtcgcccgcccccgcccgagagagctctggccccgcgagcggggccgggagcctggcctcccgccgcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggccgggggagggaaaagaaaaggattttaagcaaggactccctcgccctgcgagggtgaagcggctgcggcctggctgagccccccacgcccccgccccgtgtaaaaagcctccttgtgcaatggtcttttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctccccttctctcttctctctctctctctctctctctctctctctctctcgtcctcatttccccctcccaacccctctctcaccgctgccctccctagctcgctggctttctctcttgcttctctcttttcctcccaacacccccgccccctttggtttggcaatttcgtcttaagtgtttctcaaaagaggttactttagttagcatgcgcgctgtgggcaattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatccgtgaattgcttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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