2024-04-29 14:23:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_047845764 1476 bp mRNA linear MAM 04-MAR-2023 DEFINITION PREDICTED: Prionailurus viverrinus homeobox B8 (HOXB8), transcript variant X1, mRNA. ACCESSION XM_047845764 VERSION XM_047845764.1 DBLINK BioProject: PRJNA827818 KEYWORDS RefSeq. SOURCE Prionailurus viverrinus (fishing cat) ORGANISM Prionailurus viverrinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Prionailurus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025927605) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_022837055.1-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/03/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1476 /organism="Prionailurus viverrinus" /mol_type="mRNA" /isolate="Anna" /db_xref="taxon:61388" /chromosome="Unknown" /sex="female" /tissue_type="kidney" /dev_stage="adult" gene 1..1476 /gene="HOXB8" /note="homeobox B8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:125158537" CDS 1..732 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X1" /protein_id="XP_047701720.1" /db_xref="GeneID:125158537" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature order(439..453,457..459,508..510,526..528,565..567, 571..576,583..588,592..600,604..609) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(445..447,454..456,574..576,583..588,595..597) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 448..606 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
atgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcgggggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccaccgctccctaccagcagaacccgtgcgccgtggcgtgccacggggacccgggcaacttctacggctacgacccgctgcagcgacagagcctgttcggtgcgcaggatccagacctggtgcagtacgccgactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggttcagagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggcggatcgaggtatcgcatgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccggaggcggcggacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggccgcggctgccctccgtccgcgggtcccccgaccacgccgccgtcgcccgcccccgcccgagagagctctggccccgcgagcggggccgggagcctggcctcccgccgcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggccgggggagggaaaagaaaaggattttaagcaaggactccctcgccctgcgagggtgaagcggctgcggcctggctgagccccccacgcccccgccccgtgtaaaaagcctccttgtgcaatggtcttttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctccccttctctcttctctctctctctctctctctctctctctctctctcgtcctcatttccccctcccaacccctctctcaccgctgccctccctagctcgctggctttctctcttgcttctctcttttcctcccaacacccccgccccctttggtttggcaatttcgtcttaagtgtttctcaaaagaggttactttagttagcatgcgcgctgtgggcaattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatccgtgaattgcttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]