2024-05-19 09:39:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_047413205 797 bp mRNA linear PLN 05-APR-2022 DEFINITION PREDICTED: Capsicum annuum probable copper-transporting ATPase HMA5 (LOC124898933), mRNA. ACCESSION XM_047413205 VERSION XM_047413205.1 DBLINK BioProject: PRJNA814299 KEYWORDS RefSeq. SOURCE Capsicum annuum ORGANISM Capsicum annuum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_061115) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Capsicum annuum Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..797 /organism="Capsicum annuum" /mol_type="mRNA" /cultivar="UCD-10X-F1" /db_xref="taxon:4072" /chromosome="5" /tissue_type="leaf" /country="USA: Davis, California" gene 1..797 /gene="LOC124898933" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns" /db_xref="GeneID:124898933" CDS 160..417 /gene="LOC124898933" /codon_start=1 /product="probable copper-transporting ATPase HMA5" /protein_id="XP_047269161.1" /db_xref="GeneID:124898933" /translation="
MQIYSMQKRTQGLLKQVRTNGTWICSSVGISIMAIACACALGLATPAAVMVGKGVGASRGILIKGGQALEGEQKVNCILFDKTGT"
misc_feature <238..>414 /gene="LOC124898933" /note="Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl21460" /db_xref="CDD:451251" ORIGIN
cctcattcattattgcactctcttgtggttcatattgtgtatatttttaaataatgaggttatgcagactttatttatagctttggatgattactctagagataacagaggtgatgttggtttttgggttcgtgaggctgccatggatggccttgagatatgcaaatatattctatgcaaaagaggactcaaggacttctcaagcaagtcagaacaaatggaacttggatctgttcctcagttggtatatctataatggccatagcttgcgcatgtgcccttggtcttgctactccagctgccgtcatggttggcaaaggagttggtgcttctcgaggtatcttgattaaaggtgggcaggctttggaaggtgaacaaaaggtgaactgtatattgtttgataagacagggacctgataatgggcaaaccagttgttgtaaacacaaagcttttcaaatctatggtacttcgagaattttacaaattggttgtggcagttaaggtacatttaagtctagtttagacttcttgaatgcattatcacaattaccagcccctgttgtgtggtgtattctttcctaatgtttgccctactagttctttcactcttgttaacttagttatgtttccgttgtcctaacagagcaacttagttgataaagtttcagactttgaagtgaagtgtttttagttttgttagatctatataaacttacccatccttgagccgagggtcaacctctctacctttgaggtagagataaggttggcgtacaatcgaacctccctccgtgaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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