2024-05-19 07:34:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_047402572 1561 bp mRNA linear PLN 05-APR-2022 DEFINITION PREDICTED: Capsicum annuum calcium-transporting ATPase, endoplasmic reticulum-type-like (LOC107852533), transcript variant X3, mRNA. ACCESSION XM_047402572 VERSION XM_047402572.1 DBLINK BioProject: PRJNA814299 KEYWORDS RefSeq. SOURCE Capsicum annuum ORGANISM Capsicum annuum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025830631) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Capsicum annuum Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1561 /organism="Capsicum annuum" /mol_type="mRNA" /cultivar="UCD-10X-F1" /db_xref="taxon:4072" /chromosome="Unknown" /tissue_type="leaf" /country="USA: Davis, California" gene 1..1561 /gene="LOC107852533" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns" /db_xref="GeneID:107852533" CDS 1067..1519 /gene="LOC107852533" /codon_start=1 /product="calcium-transporting ATPase, endoplasmic reticulum-type-like isoform X2" /protein_id="XP_047258528.1" /db_xref="GeneID:107852533" /translation="
MGEVVAMTGDGVNDAPALKLADIGIAMGITRTEVAKEASDMVLADDNFSTIVSAVAEGRAIYNTMKAFIRYMISSNVGEVISIFLTAVLGIPESLIPVQLLWVNLVTDGPPDTALGFNPADVDIMQKPPRKSNDALINSWGFFRYMILSF"
misc_feature <1067..1507 /gene="LOC107852533" /note="Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl21460" /db_xref="CDD:451251" ORIGIN
tgggcatttattgtaggttttgggcttcataaggtttggactatagcatttgaatagcagactgatctttctgtatactaagatagactactttaacaattatttatgtttatcgttagtcttagattttttatcttcccctttcatttgccttttctctgcttcaattcgattagagatgctacttgctgaaaacatctgacatcttaaaagtatgtcctgttgccaacttcactagattaaaatgttaatcaactcatctcaatttcagaacatagggatttttagcactgtccgtttaactgtttttaacgttcttcagtttccaaaagtaaaaaaatgcccaccaatagtttgaagtgttatatgtcctttgtgcaacaattcttctgtggagtccagctccacaacatgatatttaatctaggaaatgcttaggtttttttgatgtgttgaactctgtcacagaagttgagcttggtaatatctggacatctgattaaaacatgttttgtctagggtgctgttgagagtttgctagaatgtagtacacacgttcaacttgcagatagatcaactgctccaattgacgagtcttgtaggcaactattgttgtcgaggctcttggagatgagctcaaagggtctgcggtgcttgggcttggcatataaagatgacttaggtgagctttcaggatacaatgttgagactcatcttgcccacaagaagctgcttgatccgtcctcctgctgctccattgaaagtgatctagtttttgtgggagttgttggactaagggacccaccacatgaggaagttcacaaggcagtaaatgactgcagaagagctgggatcaaaatcatggttataactggagacaataaatccactgctgaggccgtttgcagggaattcaattgttttctcatggtgagaatcttaagggaagtagttttactggcaaagaattcatggcacaaattgagatattgtcacaagatggaggcaaggtattttgtcgtgctgacccaggcacaaacaagaaattgtaaggattctgagggagatgggtgaagtagttgcaatgactggagatggcgtcaatgatgcacctgcactaaaacttgctgacattggaatagccatgggcattacaagaactgaggttgcaaaagaagcttctgatatggttctggcagatgacaatttcagtactatagtctctgctgttgcagagggacgtgcgatctacaataccatgaaggccttcatcagatatatgatatcatccaatgttggtgaggtcatctccattttcttgactgctgttttgggtataccagaaagtttgatacctgtgcagttgctctgggtaaatttggtaacagatggtccacctgatacagctctcggatttaaccctgccgatgttgatataatgcagaaaccacctaggaagagcaatgatgctctcataaactcctggggtttctttcgttatatgatactgtccttttgagcaagggtctttcagaaacacagcctctctacaaaggtaagg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]