2024-05-01 02:33:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046691101 5672 bp mRNA linear INV 14-FEB-2022 DEFINITION PREDICTED: Haliotis rubra ephexin-1-like (LOC124257111), mRNA. ACCESSION XM_046691101 VERSION XM_046691101.1 DBLINK BioProject: PRJNA801670 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Haliotis rubra (blacklip abalone) ORGANISM Haliotis rubra Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Vetigastropoda; Lepetellida; Haliotoidea; Haliotidae; Haliotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025767357) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Haliotis rubra Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-535 QXJH01000065.1 555193-555727 c 536-602 QXJH01000065.1 554800-554866 c 603-647 QXJH01000065.1 552242-552286 c 648-768 QXJH01000065.1 549726-549846 c 769-925 QXJH01000065.1 549072-549228 c 926-949 QXJH01000065.1 547745-547768 c 950-1116 QXJH01000065.1 546652-546818 c 1117-1173 QXJH01000065.1 545580-545636 c 1174-1352 QXJH01000065.1 545171-545349 c 1353-1365 QXJH01000065.1 544558-544570 c 1366-1448 QXJH01000065.1 544474-544556 c 1449-1650 QXJH01000065.1 543778-543979 c 1651-1740 QXJH01000065.1 542283-542372 c 1741-1913 QXJH01000065.1 541253-541425 c 1914-2099 QXJH01000065.1 540344-540529 c 2100-2176 QXJH01000065.1 539266-539342 c 2177-2181 QXJH01000065.1 536097-536101 c 2182-2281 QXJH01000065.1 535996-536095 c 2282-5672 QXJH01000065.1 531930-535320 c FEATURES Location/Qualifiers source 1..5672 /organism="Haliotis rubra" /mol_type="mRNA" /isolate="DU_JTF1" /isolation_source="Aquaculture farm" /db_xref="taxon:36100" /chromosome="Unknown" /tissue_type="muscle" /dev_stage="adult" /country="Australia: Jade Tiger Abalone Farm, Indented Head, Victoria" /collection_date="2017" /collected_by="Adam Miller" gene 1..5672 /gene="LOC124257111" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:124257111" CDS 100..2442 /gene="LOC124257111" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons" /codon_start=1 /product="LOW QUALITY PROTEIN: ephexin-1-like" /protein_id="XP_046547057.1" /db_xref="GeneID:124257111" /translation="
MKHLVMSWRRCRPFHGAPVRGAVERGKRKNSVRQSRPSYQRTRDCLVPHLLPLPPRSSRVLNQTNIENSPPLPPRNQSTSGPTLDMVIPAPERAPSSHSTGDLRRKGQLSVSKDSYLHGQHLKSASLGDVPASMDHTDGNGEEFPDGYVDYDPSTGRTGKTESVDRRDFAKTSVKKKKGSFFRKTATADDRPASSTSSSGYIYPETDQWSPAGVEGQSLYQDLDDDQVYGRLGKEMKIKTSKFVNEPLYQYYTKENVIRANRKLKMEEAISDDDNVVKRKRKKEGGIYEDVEQMMQDGILTEEEAKSAEDISPSKRSTMLEVLGRTGSLHRALWCEMPEVKDKKVLETMEPQERKLQEAMFEIVTSEASYLKSLNILITVFLIAPEFSADHSDRCVVTKRERQVLFSNIGAIRDASEKFLADLEERWQTNCVMNDICDIIYNHSLKNFYGKRVEYVDAVRRLERNPECQSLPMSSFLLLPMQRITRLPLLVDAICHRLEPGSDRHKSSARALENLHRVVRKCNDGAKKMQQTEQMCILASQLDFKVKEIPLISSSRYIVKQAELTRISTDASSRIPFGKAFRGPSKQNMYLFLFNDMVMITKKKGNSYSVTDYCQRNSLHVEAIDNVEKCRLLPQGVPHGCKNLFLLVMLENFEKKQVEMVLACPSASDRTRWIDAVTPVQTSETERIYEDWDCPQVQCVKKYVAQEPDELSLEESDVVNVYKKTEDQWYEGERIRDGERGWFPACYTEEIMNSHVRSRNLRLRYRLLLASQQYTETVAK"
misc_feature 1174..1671 /gene="LOC124257111" /note="Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Region: RhoGEF; smart00325" /db_xref="CDD:214619" misc_feature order(1183..1185,1195..1197,1486..1488,1519..1524, 1531..1536,1540..1545,1552..1557,1564..1569,1576..1578, 1654..1656,1666..1668) /gene="LOC124257111" /note="GTPase interaction site [polypeptide binding]; other site" /db_xref="CDD:238091" misc_feature 1732..2142 /gene="LOC124257111" /note="Ephexin Pleckstrin homology (PH) domain; Region: PH_ephexin; cd01221" /db_xref="CDD:269929" misc_feature 2185..2349 /gene="LOC124257111" /note="Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors; Region: SH3_ephexin1_like; cd11793" /db_xref="CDD:212727" misc_feature order(2200..2202,2206..2208,2215..2217,2227..2229, 2281..2286,2329..2331,2335..2340) /gene="LOC124257111" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212727" polyA_site 5672 /gene="LOC124257111" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
tgaacaaaattggaaacaaatttggtaagattggtaaaactaaaggttctgaaccaccatcaatttcgaccggaactgattctgatatggaagctgtagatgaagcacttggtgatgagttggagaaggtgtcgtccctttcacggagctccagtgagaggagcagtggaaagaggcaaaagaaagaactcagtgagacagtctcgtccaagttatcagaggacgagggactgtcttgtcccacacctcctccccctcccaccaagatcgtcccgggttctaaaccaaacaaacatcgaaaactcgcccccacttcctccccggaatcagtcgacatccggacccacactggatatggtcattccggcaccggaaagggcgccgtcgtctcattccacaggtgaccttcgtcgtaaaggtcagctgagtgtgagcaaggacagttacctccatggccaacatctcaagtccgcatcacttggagacgtccctgcttccatggaccacacagatggcaatggcgaggaatttccagatggctatgtggattatgacccttccactgggcggactggcaagacagaatctgtcgacaggagagattttgctaagacatctgtgaagaaaaagaaaggatctttcttcagaaaaactgccacagctgatgaccggccagcatctagcacctcatcatctgggtacatctaccccgaaactgatcaatggagtcctgctggagtagagggacagtctctataccaagatcttgatgatgatcaggtgtacggccgactgggtaaagagatgaagataaaaacaagcaagtttgtcaatgagcctctctatcagtattacacgaaggagaacgtcatccgagctaaccgcaaactgaagatggaggaggccattagtgatgatgataatgttgttaagagaaagagaaagaaagaagggggaatatacgaagatgtggagcagatgatgcaagatgggatactgacagaggaggaggccaaatctgcggaggacatctcgccaagcaaacgctccaccatgttggaagtcctcggacgaacaggatcactgcacagagccctctggtgtgagatgccggaggttaaggataagaaggtgcttgagacaatggaaccgcaagagaggaaactgcaagaggcgatgtttgagatagtaacatcggaggcttcgtatctgaagagccttaacatcctcatcacggtgttcttgatcgcacccgagttctctgccgaccactccgaccgctgtgttgtgactaagagggagcgccaagtgctcttctctaacatcggtgctattagagatgccagtgaaaaattccttgctgacctggaggagaggtggcagaccaactgtgtgatgaatgacatctgtgatatcatctacaatcactccctgaagaacttttatgggaaacgcgtagagtacgtagatgctgtgcgtcgtctagagcgtaatcctgagtgccagtcactgccaatgtcgtcgttcctgttgctgccgatgcagagaatcaccagactgccacttttggtggatgccatttgtcaccgtctcgaaccaggttctgatcgacacaagtcttctgccagggctctggaaaatctccacagggtggtgcggaagtgcaatgatggagcgaaaaagatgcaacagacagagcagatgtgtatcttggcttcacagctagacttcaaggtcaaggaaatcccactcatctcatcctcacgatatattgtaaaacaagcggagcttacccgtatcagcaccgacgccagtagccgcataccgtttggcaaggcattcagaggacccagcaagcagaacatgtacctgtttctgttcaacgacatggtcatgatcaccaagaagaaaggcaactcttactctgtgactgattattgccaacggaactctcttcacgtggaggcaatagacaacgtagagaagtgtcgcctgctgccccagggtgtgccccatggctgcaagaacctgttcctgcttgtcatgttggagaacttcgagaagaagcaggttgagatggtcctggcatgtccatcagcgagcgacaggactcggtggattgatgcagtcactccagtacagacatcggaaacagaaagaatttatgaagactgggactgcccccaggtgcagtgtgtgaagaagtatgtagcccaggaaccggacgagttgagtctggaggagtcggatgtggtcaacgtctacaagaagactgaggaccagtggtatgagggagagcgtattcgtgacggtgaacggggctggttcccagcatgctacacagaagaaatcatgaactcacacgttcgatcccgtaatctacgccttaggtaccggctactgttggcatcgcaacaatacacggaaacggtcgccaaatagtcatgtgacgatcgaaaacaatgcaaattagtagagacacaatttcaagatgttgctaagcatccactaagacgtttcataaagtgaatttcagatgcttctatatgaagtttagcagcataaatgacatttcaaatgaagattttgcatggtatatatgcagtaaagaacatgaggacgattattgccaagtgtggcatcatttaaatgtcatgtgatcagaaactatgtacaaactagtcgtgtgacctttgacagtctttttgacgtgtcatgtgatgtgcgggtcacagtagtctactcgaagattgagttgcactcaacttacatatcagactctcatgaccatgttattgtatgttgattgtatgaagttattttgttgatattgagcatcagtggattctagcctgggtgttttactgctccttgttcacccaacattcagctagatcttgttcctgtggccaagtctctgtgaaattcttcgtcagtatttgtacattgtgtactagaatgtgataccagcttgagtgatgatgttgcaacagtttgtgtggtctggggctgtacagaacacagtgatgggggacatgtaaagcgggacatgtaaagtcacactgactggtgtatgtgattggttaacagcatgtgaagactggtcatggtcaaatacctttgatgcgtcaaggtacttggtgaatgtatgtgaggtcagtctgacctttgatgtgattggttaaaagcatgtgaaggctggacatggtcaaatacctttgatggttcgagacacgtaatggatatttgttggtttgatctgtatattctgagttaatactatgtgaagattggacatggtcaagttcctttgatgcgtcaaggtacttggtgaatgtatgtgaggtcagtctgacctttgatgtgattggttaacagcatgtgaagatttaacaaggataagtacctatggtacgtggttgatgtatgtgaggtcagtctgacctttgatgtgattggttaacagtatgtgaagattaaacaaggataagtacctatggtacatggttggtgtatgtgaggtcactctgacctttgatgtgattggttaacagcatgtgaagattaaacaaggataagtacctatggtacatggttgatgtatgtgaggtcactctgacctttgatgtgattggttaacagcatgtgtaggttacacaaggggatgaatgactacagtcggtgtgacgtgtatgatgtgatcaaccaataccaacacggtgtgatgctgcatgagttggaattatggccatggtttgatcaaggtcagcttgacctcagagagtatggaactgggtcagcttgatctgagttttggaataagggcaactgctttaatgtttcttcaagtcatgtcagaaggatagaagagggtcaagcacacaaaagagacttcaaggtaaggacctgaaggattgaattgagccaaggcatagttgctccttaaggtctccaccagcatgactagaaggatggaatcgagtcaagccatcactgattttcaaggtcaagctgccctgaagtctctgacaaggcatattccattttatttgcttaacttcaatgtatgatgtgtacctgtggaacggaccaaactgtcctttatatgtacagttgatgtaaattagaggtgttgtttcatgggtccaatccatcagcctgaccttgctgatcaagtgattcaagggttttacatgagagtcaacaaatgtgaaacaaactgagtgtaaacatccaaatgatggcatattttaacatgttcagcctggaacacacgactgaatttttatccttttaacatattaaagttaaattggaaaaggtatatgtgaaatacagttgctcaacttaacaaaggactgatctagtgcatagatattacatgaagcacctggtgcaaagacagagaaagaactgtcagaaactgttgcccacttgatatgctgttcccatggaactactagtatcatctttgtcatgcaaaatgaatatgctgtgacttttatttcatgacttgggatacaacatgttgattatttggcagacatgtgtttgtgtttctggttattgctgctattagtgcctattagcaccaaaggtgagatttcatgaaatgttccttatctggttgccatggttactctaccaagggtgtccagtcaaatactctgtaagctatgctaagcagatactttaatatgtaccacaagtctacagtatgtacatagttcatttattacacctccaggtattgtttcatttggcattaatggtttttgatattaaatacgcgtttgtgattattgtaaagaaaatatgtatttatgtttgtaatcaggaaatcatatatctcataattattcagttttcaactgtggttcttttgtaagaatggttaacactgctgacattagtaagggatttcaatgctgtatttaagatacttagtgccctgaacatgattagatttactatatactccaaccatttatgcatggagttgttagccaaagggtatcagaaaattatcatactttagcgaggatctgcttctcattggttggaatcctatatgtgtctcagttatcattttctctacctgccaatttttattatttttgtgtgaagattggacatggtcaagttcctttgatgcatcaaggtacctggtgaatgtatgttaggtatgtctgacctttgatgtgaagattaaacaaggataagtacctatggtatatggttgatgtatgtgaggtcagtctgacctttgatgtgattggttaacagcatgtatatactatatactagtagttgatatctggttgaagtcacagagtgtaaagaaaaaacagattgctaaaactagctggcttattatgaacaacttgcaatatgtcacagtgaacatgtgttaatttgaatggttcatcctcaaataattataaggggttagtatcttaaggccattggcagtcagtaaaaccaggaaatgtactaatgtcttaaaaatatactgaaagaaacaaataaaggaacacaaggaaattcaagtgttccttaaatattttcaagttttcatcaccaactttgaaagcgctgtgggaggaagtctgagaatagataaaggaacattgccatgaagttatgttcccttatttgtttccctcagtata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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