2024-04-29 08:45:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046677600 1631 bp mRNA linear MAM 04-MAR-2023 DEFINITION PREDICTED: Equus quagga homeobox B8 (HOXB8), transcript variant X3, mRNA. ACCESSION XM_046677600 VERSION XM_046677600.1 DBLINK BioProject: PRJNA805220 KEYWORDS RefSeq. SOURCE Equus quagga ORGANISM Equus quagga Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060277) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_021613505.1-RS_2023_03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 03/03/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1631 /organism="Equus quagga" /mol_type="mRNA" /isolate="Etosha38" /specimen_voucher="Etosha38" /db_xref="taxon:89248" /chromosome="11" /tissue_type="Blood" /country="Namibia:Etosha" /collection_date="2008" /collected_by="Pauline Kamath, UC Berkeley" gene 1..1631 /gene="HOXB8" /note="homeobox B8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:124247840" CDS 379..1110 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X2" /protein_id="XP_046533556.1" /db_xref="GeneID:124247840" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature order(817..831,835..837,886..888,904..906,943..945, 949..954,961..966,970..978,982..987) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(823..825,832..834,952..954,961..966,973..975) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 826..984 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ctgccccgaaaccggttgccgggatcggcaggagagggaacggggaatttctggcacggtgtagggatgatttagaacaagccattgaatttctacctcaccgctctctctctcgctcgctctctctcgctctcaccctcgctctgcgttctgtccgggaggagtacggagaagccaataggatgcggggtctctaatggatgcaaatgatcatgaaaagacagtgcaaaatatgaaacaactcatttgcagggaagtaaatcaccgaaaactgtttatgaactggcatcccttcttcgaaatgtaaagcgaggacctctttaagtggcgcccccaactacagccgccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtatggtcccagcagcggcggcagcttccagcacccgtcgcaaatccaggaattctaccacgggccgtcgtcgctgtccacggctccctaccagcagaacccgtgcgctgtggcgtgccacggggaccccggcaacttttacggctacgacccgctgcagcggcagagcctgttcggggcgcaggatccagacctggtgcagtacgccgactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggctcagagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccttggagctggagaaggagttcctatttaatccctatctgactcgcaagcggcggatcgaggtatcgcatgctctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccggaggcggcggacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggccgcggccgccctccgtccgcgggtccccgaccgcgccgccgtcgcccgcccccgcccgagagagctctggccccgcgagcggggccgggagcctggcctcccgctgcagcgtccccccgccgcgccagtccctgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtgggtctccttcccttctcctgggggccgggggaaagaaaaggattttaagcaaggactccctcgcccagcgagggtgagcggccgcggcctggctgagcccccaccccccgcccccgcccccgcccccgcccccgccccgtgtaaaaagcctccttgtgcaatggtctttcttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctctccctctctctctctctctctctctctctctctctctctctct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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