2024-05-19 08:41:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045600296 4758 bp mRNA linear INV 22-DEC-2021 DEFINITION PREDICTED: Melitaea cinxia serine-rich adhesin for platelets-like (LOC123666088), mRNA. ACCESSION XM_045600296 VERSION XM_045600296.1 DBLINK BioProject: PRJNA787967 KEYWORDS RefSeq; includes ab initio. SOURCE Melitaea cinxia (Glanville fritillary) ORGANISM Melitaea cinxia Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Melitaea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059418) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Melitaea cinxia Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 83% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4758 /organism="Melitaea cinxia" /mol_type="mRNA" /db_xref="taxon:113334" /chromosome="25" gene 1..4758 /gene="LOC123666088" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:123666088" CDS 1..4686 /gene="LOC123666088" /codon_start=1 /product="serine-rich adhesin for platelets-like" /protein_id="XP_045456252.1" /db_xref="GeneID:123666088" /translation="
MVTIGHKSIDYFVKFLEAFTTLSPKFLLVDSIVVTQQYTQEDEPMIAISQIRTATGENDILTAIESIKTKKPKPQSTTSSPPTQQTNDQTTITAGREQSSDQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSTDQTSTAVGGKQSSDQTTTSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSTDQTSTAVGGKQSSDQTTTSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSSDQSITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAFSGKQSSVQTTTSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSSGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQPSDQTTTAVSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSDQTTSSSSNQTTTILSSEQSSDQTATSSNDQTTTLSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTVFSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAVSGKQSSVQTTTSSSNQTNTVLSGEQSSDKTGTSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQPSDQTTTAVSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSVQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTLSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTSSSNQTTTVLSGEQSSDKTGTSSDDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAVSGKQSSVQTTTSSSNQTNTVLSGEQSSDKTGTSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQPSDQTTTAVSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSDQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAFSGKQSSVQTTSSSSNQTTTILSSEQSSDQTATSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAASGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSDQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSRDQTITAVGGKQSSVQTATSSSNQTTTVVSGKQSSDQTGTSSDDRTTIAPGGEQSSDQTTTATLSSDQPNTIPEGEHFSDQTTPSPGGEPSVNQNTPAPGSELSSDQTNTSPGSSSENETTPTRGEEQPSTNPEIQPLNSNTTSPEEQSQSDRTASGPQPTAPGSDTNVTLKEEKARALQVDMNLKLLILPQGPKNSKNCYCACDSQDPPKLIPMKELPAGIRGA"
misc_feature <3280..4509 /gene="LOC123666088" /note="DNA polymerase III subunits gamma and tau; Provisional; Region: PRK14949" /db_xref="CDD:237863" polyA_site 4758 /gene="LOC123666088" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atggttacaattggtcataagtccatcgattatttcgtaaaattcttggaggcatttacgacattgagtcctaagttcttgctcgtagactctattgttgttactcaacagtacacacaagaggatgaacctatgatcgctataagtcaaataagaactgctactggagaaaatgatatcctcacagccattgaaagcataaaaacaaagaagccaaaacctcaatcaacaacatcttcacctccaacacaacaaactaatgatcaaactactattactgctggtcgcgaacaatctagtgatcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctactgatcaaactagtactgctgttggtggtaaacaatctagtgatcaaactaccacatcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctactgatcaaactagtactgctgttggtggtaaacaatctagtgatcaaactaccacatcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaagtattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaacaactactgcttttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctagtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaacctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagctcctggtggcgaacaatctagtgaccaaaccactactgccacatcgtctagtgatcaaactacctcctcgtctagtaatcaaacaacaactattcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactctttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgtttttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaaacactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaacctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagctcctggtggcgaacaatctagtgaccaaacaactactgccacatcatctagtgttcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactctttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaaacactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaacctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagctcctggtggcgaacaatctagtgaccaaaccactactgccacatcatctagtgatcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaacaactactgcttttagtggtaaacaatctagtgttcaaactacctcgtcgtctagtaatcaaacaacaactattcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgctgctagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagcacctggtggcgaacaatctagtgaccaaaccactactgccacatcatctagtgatcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctcgtgatcaaactattactgctgttggtggtaaacaatctagtgttcaaactgccacatcgtctagtaatcaaacaacaactgttgttagtggcaaacaatctagtgatcaaactggcacatcatctgatgatcgtactaccattgctcctggtggcgaacaatctagtgaccaaaccactactgccacattatcgagtgatcaaccaaatactatccccgaaggtgaacattttagtgatcaaactactccttctcctggtggcgagccatctgttaatcaaaacactcctgctcctggtagcgagctatctagcgatcaaacaaatacttctcctggatcctcttctgaaaacgaaactactcctacccgtggcgaagaacaaccttcaacaaatcctgaaattcagcctctcaactcgaatactacatcacccgaagaacaatctcaatctgatcgaacagcatctggaccgcagccaacagcacctggctctgatacaaacgtaactttaaaagaagaaaaagcgcgagcccttcaagtggatatgaatctaaagttactcattcttcctcaaggaccgaagaatagtaaaaattgttattgtgcttgtgacagccaagacccgccaaaattgatacctatgaaggaattgccagcaggaataagaggtgcataaatttgaaaaatattgattttgtattttttgtggtcatttatgtattttattgaatatatcatttcattatta
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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