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2024-05-19 08:41:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045600296            4758 bp    mRNA    linear   INV 22-DEC-2021
DEFINITION  PREDICTED: Melitaea cinxia serine-rich adhesin for platelets-like
            (LOC123666088), mRNA.
ACCESSION   XM_045600296
VERSION     XM_045600296.1
DBLINK      BioProject: PRJNA787967
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Melitaea cinxia (Glanville fritillary)
  ORGANISM  Melitaea cinxia
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata;
            Ditrysia; Papilionoidea; Nymphalidae; Nymphalinae; Melitaea.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_059418) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Melitaea cinxia Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 83% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4758
                     /organism="Melitaea cinxia"
                     /mol_type="mRNA"
                     /db_xref="taxon:113334"
                     /chromosome="25"
     gene            1..4758
                     /gene="LOC123666088"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 15% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:123666088"
     CDS             1..4686
                     /gene="LOC123666088"
                     /codon_start=1
                     /product="serine-rich adhesin for platelets-like"
                     /protein_id="XP_045456252.1"
                     /db_xref="GeneID:123666088"
                     /translation="
MVTIGHKSIDYFVKFLEAFTTLSPKFLLVDSIVVTQQYTQEDEPMIAISQIRTATGENDILTAIESIKTKKPKPQSTTSSPPTQQTNDQTTITAGREQSSDQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSTDQTSTAVGGKQSSDQTTTSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSTDQTSTAVGGKQSSDQTTTSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSSDQSITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAFSGKQSSVQTTTSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSSGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQPSDQTTTAVSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSDQTTSSSSNQTTTILSSEQSSDQTATSSNDQTTTLSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTVFSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAVSGKQSSVQTTTSSSNQTNTVLSGEQSSDKTGTSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQPSDQTTTAVSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSVQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTLSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTSSSNQTTTVLSGEQSSDKTGTSSDDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAVSGKQSSVQTTTSSSNQTNTVLSGEQSSDKTGTSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQPSDQTTTAVSGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSDQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAFSGKQSSVQTTSSSSNQTTTILSSEQSSDQTATSSNDQTTTVSGGEQSSDQTITAVGGKQSSDQTATSSNDQTTTVSDGEQSSDQTTTAASGKQSSVQTTTSSSNQTTTVLSGEQSSDKTGTSSDDRTTIAPGGEQSSDQTTTATSSSDQTTSSSSNQTTTVLSSEQSSDQTATSSNDQTTTVSGGEQSRDQTITAVGGKQSSVQTATSSSNQTTTVVSGKQSSDQTGTSSDDRTTIAPGGEQSSDQTTTATLSSDQPNTIPEGEHFSDQTTPSPGGEPSVNQNTPAPGSELSSDQTNTSPGSSSENETTPTRGEEQPSTNPEIQPLNSNTTSPEEQSQSDRTASGPQPTAPGSDTNVTLKEEKARALQVDMNLKLLILPQGPKNSKNCYCACDSQDPPKLIPMKELPAGIRGA"
     misc_feature    <3280..4509
                     /gene="LOC123666088"
                     /note="DNA polymerase III subunits gamma and tau;
                     Provisional; Region: PRK14949"
                     /db_xref="CDD:237863"
     polyA_site      4758
                     /gene="LOC123666088"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
atggttacaattggtcataagtccatcgattatttcgtaaaattcttggaggcatttacgacattgagtcctaagttcttgctcgtagactctattgttgttactcaacagtacacacaagaggatgaacctatgatcgctataagtcaaataagaactgctactggagaaaatgatatcctcacagccattgaaagcataaaaacaaagaagccaaaacctcaatcaacaacatcttcacctccaacacaacaaactaatgatcaaactactattactgctggtcgcgaacaatctagtgatcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctactgatcaaactagtactgctgttggtggtaaacaatctagtgatcaaactaccacatcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctactgatcaaactagtactgctgttggtggtaaacaatctagtgatcaaactaccacatcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaagtattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaacaactactgcttttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctagtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaacctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagctcctggtggcgaacaatctagtgaccaaaccactactgccacatcgtctagtgatcaaactacctcctcgtctagtaatcaaacaacaactattcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactctttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgtttttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaaacactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaacctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagctcctggtggcgaacaatctagtgaccaaacaactactgccacatcatctagtgttcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactctttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaaacactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaacctagtgatcaaactactactgctgttagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagctcctggtggcgaacaatctagtgaccaaaccactactgccacatcatctagtgatcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaacaactactgcttttagtggtaaacaatctagtgttcaaactacctcgtcgtctagtaatcaaacaacaactattcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctagtgatcaaactattactgctgttggtggtaaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctgatggcgaacaatctagtgatcaaactactactgctgctagtggtaaacaatctagtgttcaaactaccacatcgtctagtaatcaaacaacaactgttctcagtggcgaacaatctagtgataaaaccggcacatcatctgatgatcgtactaccatagcacctggtggcgaacaatctagtgaccaaaccactactgccacatcatctagtgatcaaactacctcgtcgtctagtaatcaaacaacaactgttcttagtagcgaacaatctagtgatcaaactgccacatcatctaatgatcaaactactactgtttctggtggcgaacaatctcgtgatcaaactattactgctgttggtggtaaacaatctagtgttcaaactgccacatcgtctagtaatcaaacaacaactgttgttagtggcaaacaatctagtgatcaaactggcacatcatctgatgatcgtactaccattgctcctggtggcgaacaatctagtgaccaaaccactactgccacattatcgagtgatcaaccaaatactatccccgaaggtgaacattttagtgatcaaactactccttctcctggtggcgagccatctgttaatcaaaacactcctgctcctggtagcgagctatctagcgatcaaacaaatacttctcctggatcctcttctgaaaacgaaactactcctacccgtggcgaagaacaaccttcaacaaatcctgaaattcagcctctcaactcgaatactacatcacccgaagaacaatctcaatctgatcgaacagcatctggaccgcagccaacagcacctggctctgatacaaacgtaactttaaaagaagaaaaagcgcgagcccttcaagtggatatgaatctaaagttactcattcttcctcaaggaccgaagaatagtaaaaattgttattgtgcttgtgacagccaagacccgccaaaattgatacctatgaaggaattgccagcaggaataagaggtgcataaatttgaaaaatattgattttgtattttttgtggtcatttatgtattttattgaatatatcatttcattatta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]