2024-05-19 06:06:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_043990219 2070 bp mRNA linear MAM 28-SEP-2021 DEFINITION PREDICTED: Dromiciops gliroides zinc finger protein 215-like (LOC122744641), transcript variant X4, mRNA. ACCESSION XM_043990219 VERSION XM_043990219.1 DBLINK BioProject: PRJNA764759 KEYWORDS RefSeq. SOURCE Dromiciops gliroides (monito del monte) ORGANISM Dromiciops gliroides Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Microbiotheria; Microbiotheriidae; Dromiciops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_057862.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Dromiciops gliroides Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2070 /organism="Dromiciops gliroides" /mol_type="mRNA" /isolate="mDroGli1" /db_xref="taxon:33562" /chromosome="2" /sex="female" /tissue_type="kidney, liver" /dev_stage="adult" /country="Chile: San Martin, comuna de Valdivia, Region de los Rios" /lat_lon="39.647794 S 73.196942 W" /collection_date="2014-02-10" /collected_by="Roberto Nespolo, Julian Quintero" gene 1..2070 /gene="LOC122744641" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:122744641" CDS 287..607 /gene="LOC122744641" /codon_start=1 /product="zinc finger protein 215-like isoform X1" /protein_id="XP_043846154.1" /db_xref="GeneID:122744641" /translation="
MKSEHPLNSKEGMTMEELMNMFEKKALPEKYDFLPKQSTEVEEMTSGLLASRSQESLMFKEYAYELQPKMEWGHLDSAQKGLYRDVMLENYSTWLHWQDIRVPSQM"
misc_feature 455..>565 /gene="LOC122744641" /note="krueppel associated box; Region: KRAB; smart00349" /db_xref="CDD:214630" ORIGIN
aacagtgagattggagggatagggaggagttagcactgttttagagaagcccctatgtatatgtgtgtgcatgtgtccatatcgtggtctttgtgtgtgagaagaggaggaaccttgtatctctgtgtgagagaagggaagaggggagcctgattccttctccaaaagaacgtgaagatagaagaggccactcctgaagaacaggatctttctttagaacctttgtgtggagttagagattgctggaacaattcctgaccatcttgccctaggagacattacttggatgaaatcggagcatccactgaacagcaaagaaggaatgactatggaagagctgatgaacatgtttgagaagaaagctctgcctgagaagtatgactttctccccaaacagagcacagaggtggaggaaatgacctctgggctcctggcatccagatcccaggaatcgctgatgttcaaggaatatgcctatgagcttcaacccaagatggaatggggacatttggattctgctcagaaaggtctttatagagatgtgatgctggagaactatagtacctggcttcattggcaggacatccgggttccaagccagatgtgatttctcagttggagcatggaaaaggcccatggaacaagaagaaaattccaaaaagcaaccgcctaggtacttctctgactaaacaccagtttgtcttacctagagttttctgtctgatgatatgctgcttctcacgagttgccaaacctcgacccatttgaagcattctactcatctccagcccttctgatctttctggcttagagaatctcctctaaaagcatcaggaccatactgtttttggtaatttttgctgatgcttttggctaggttgtttccatcctgccattcattatcaccacatataaaaagactcacactaagctatatcagctcaatttcccttctctgaactgatggggtagggcatgggaaagaagggagcactttggcatactctatagcacgggtcttcagactctgaggaataggtgatcaactaactagagggtgagaatcccagcccaccctccctgcagtagcaaatattggggcttaatacaacctacccttcatgtcttatttctgggcaactcttcattccacaccctcccataactgtgcaagtcttacccctttggtatgggggtaagtcctgggtagttatagcccaaaccctacctggtacctacagtaacatctgagcaaatgtcattggtaaagagccactgcaactacgcaatatgcccactcgctatctccccagatcaatttgtggctgtggtaatagacttctaattggtttcccacctcaaatctttcccttctttttttaaataataaaagtatattattattttttcagtcacatgtaaagatagtttttaacatttgttttttataagatttctagttcaaaatttttctccctccttcctttccctcccctctccccaagacagaaagcaatctggtataggttatatatgtacaatcacattaaacagatttctgcatctaatccactcttgacaaccaccacagtgattttcctaaagtagatctgaccatattcacccccaatcaagaaagctcagtggctctttgttcattctgggatcagacataaacttcaatgtttggcatgtgaagaccttcacaacctggtcccaacctacctttccgaccttcttatacatttctgtccttcctgcactgtacaatccaaccaaattggccttcttactattcctgaatcttataaaaacaggcaaaatatccaaatatgaataggaacttaaacatccattaagcagaaccatgaaaagaaagaggaatatgtttatagaagaaactttctgctgagttgaattcagagacaattcacttttgcttatcatttttcattgtgtattgtgattgttatcatgcagaaaacgtgactcctgacattattatattcactgttaaaacctattgtttgttgtaatttgtatttgtgaatgtttaataatatgtgtata
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]